Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55610 463 / 7e-160 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) AT2G39800 454 / 8e-158 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030158 [exp] 555 / 0 AT3G55610 1089 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001018 [exp] 553 / 0 AT3G55610 556 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10004697 [exp] 441 / 1e-156 AT3G55610 515 / 4e-180 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040264 [exp] 403 / 6e-139 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040263 [exp] 402 / 1e-137 AT3G55610 481 / 1e-162 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10005468 [exp] 165 / 7e-50 AT3G55610 170 / 2e-49 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198400 [exp] 490 / 2e-170 AT2G39800 1054 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) Potri.008G060200 [exp] 475 / 1e-164 AT2G39800 1009 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001016 pacid=23139338 polypeptide=Lus10001016 locus=Lus10001016.g ID=Lus10001016.BGIv1.0 annot-version=v1.0 ATGATAGCTTCATTGGCGATACGCAGTGGAAATGGTCTCTTACTGAAAGGTGGAAAAGAGGCCAGGCGATCAAATGCAATTTTGCACAAGGTAATCACTG ATGCAATTCCTGACGAAGTCGGGGGAAGACTTATCGGACTTGTGACTTCGAGAGACGAAATTCCTGACCTCCTTAAGCTTGATGATGTGATTGATCTTGT GATTCCTAGAGGCAGCAACAAACTGGTTTCTACTATCAAAGCATCAACTAAAATTCCTGTTCTGGGTCATGCCGATGGAATTTGTCATGTATATGTTGAC AAGTCTGCTAATATAACAACTGCGAAGCATATTGTGCTGGATGCAAAAGTAGATTATCCAGCTGCCTGTAATGCAATGGAAACGCTTTTGGTGCACAAGG ATTTAGTGCCCACCAAAGGTCTAACCGAGCTAATAGTTGGGCTTGGGAGTGAAGGTGTCATTCTATATGGCGGGCCTAGGGCAAGCAAGCAGCTAAGCAT TCCAGAGACAGCCTCATTGCATCACGAGTACAGCTCCCTGGCATGCACTGTTGAGATAGTTGATGACGTCCATGCTGCCATTGAACACATACATCGACAT GGAAGTGCACATACTGATTGCATCGTTGCTGAAGACAGAGAAGTTGCAGAGACATTTTTGCGACAAGTTGACAGTGCTGCTGTTTTCCACAATGCTAGCA CAAGATTCTGCGATGGAGCTCGATTTGGATTGGGGGCAGAGGTTGGAATAAGTACGAGTAGAATCCATGCTCGAGGCCCTGTCGGAGTTGAAGGACTGTT AACGACCCGGTGGATATTGAGAGGCAGTGGGGAAGTAGTGGATGGTGATAAGGGAGTGATCTACACCCACAAGGATATAACTGGGCAGCTTCCGATCCAT GACCAGAAGAGAGATCTGATCTGGTTGATTTGGAACGTGGAGTGGGGTTTGATCTTCTGA
AA sequence Show only first row Show all	>Lus10001016 pacid=23139338 polypeptide=Lus10001016 locus=Lus10001016.g ID=Lus10001016.BGIv1.0 annot-version=v1.0 MIASLAIRSGNGLLLKGGKEARRSNAILHKVITDAIPDEVGGRLIGLVTSRDEIPDLLKLDDVIDLVIPRGSNKLVSTIKASTKIPVLGHADGICHVYVD KSANITTAKHIVLDAKVDYPAACNAMETLLVHKDLVPTKGLTELIVGLGSEGVILYGGPRASKQLSIPETASLHHEYSSLACTVEIVDDVHAAIEHIHRH GSAHTDCIVAEDREVAETFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGSGEVVDGDKGVIYTHKDITGQLPIH DQKRDLIWLIWNVEWGLIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001016 [exp]	0	1
AT1G27385			unknown protein		Lus10015781 [exp]	4.2	0.9124
					Lus10015758 [exp]	5.5	0.9192
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	6.5	0.9184
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	6.6	0.9122
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10009182 [exp]	9.4	0.8995
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	9.9	0.8911
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001018 [exp]	10.0	0.8800
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	11.7	0.9114
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	12.0	0.8829
					Lus10025501 [exp]	12.1	0.9106

Compare expression of checked genes

Lus10001016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.