Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55605 200 / 1e-64 Mitochondrial glycoprotein family protein (.1) AT2G39795 197 / 1e-63 Mitochondrial glycoprotein family protein (.1) AT5G05990 194 / 2e-62 Mitochondrial glycoprotein family protein (.1) AT5G02050 166 / 2e-51 Mitochondrial glycoprotein family protein (.1) AT2G39790 124 / 3e-35 Mitochondrial glycoprotein family protein (.1) AT1G15870 100 / 8e-26 Mitochondrial glycoprotein family protein (.1) AT1G80720 94 / 4e-24 Mitochondrial glycoprotein family protein (.1) AT4G31930 78 / 2e-17 Mitochondrial glycoprotein family protein (.1) AT4G32605 68 / 7e-14 Mitochondrial glycoprotein family protein (.1) AT2G46190 61 / 2e-11 Mitochondrial glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030157 [exp] 323 / 3e-113 AT3G55605 236 / 6e-78 Mitochondrial glycoprotein family protein (.1) Lus10001015 [exp] 323 / 3e-113 AT3G55605 232 / 1e-76 Mitochondrial glycoprotein family protein (.1) Lus10012653 [exp] 170 / 5e-54 AT5G02050 201 / 2e-65 Mitochondrial glycoprotein family protein (.1) Lus10024351 [exp] 172 / 9e-54 AT5G02050 231 / 6e-76 Mitochondrial glycoprotein family protein (.1) Lus10026060 [exp] 95 / 7e-24 AT1G15870 263 / 4e-89 Mitochondrial glycoprotein family protein (.1) Lus10017126 [exp] 83 / 2e-19 AT4G31930 240 / 3e-80 Mitochondrial glycoprotein family protein (.1) Lus10018327 [exp] 83 / 2e-19 AT4G31930 243 / 2e-81 Mitochondrial glycoprotein family protein (.1) Lus10014351 [exp] 66 / 4e-14 AT1G80720 122 / 1e-36 Mitochondrial glycoprotein family protein (.1) Lus10012652 [exp] 70 / 6e-14 AT2G37770 441 / 4e-155 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198600 [exp] 249 / 4e-84 AT2G39795 222 / 1e-72 Mitochondrial glycoprotein family protein (.1) Potri.010G198500 [exp] 242 / 3e-81 AT3G55605 210 / 1e-67 Mitochondrial glycoprotein family protein (.1) Potri.006G090700 [exp] 201 / 4e-65 AT5G02050 228 / 9e-75 Mitochondrial glycoprotein family protein (.1) Potri.016G102200 [exp] 184 / 1e-58 AT5G02050 216 / 4e-70 Mitochondrial glycoprotein family protein (.1) Potri.001G047600 [exp] 93 / 4e-23 AT1G15870 256 / 2e-86 Mitochondrial glycoprotein family protein (.1) Potri.018G021600 [exp] 82 / 4e-19 AT4G31930 259 / 1e-87 Mitochondrial glycoprotein family protein (.1) Potri.004G049600 [exp] 63 / 6e-12 AT5G02050 96 / 4e-23 Mitochondrial glycoprotein family protein (.1) Potri.010G244500 [exp] 61 / 2e-11 AT4G32605 242 / 3e-81 Mitochondrial glycoprotein family protein (.1) Potri.008G015600 [exp] 60 / 5e-11 AT4G32605 262 / 2e-88 Mitochondrial glycoprotein family protein (.1) Potri.006G046350 [exp] 50 / 1e-07 AT2G41600 210 / 2e-69 Mitochondrial glycoprotein family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02330 [flax] [poplar] MAM33 Mitochondrial glycoprotein
Representative CDS sequence Show only first row Show all	>Lus10001017 pacid=23139334 polypeptide=Lus10001017 locus=Lus10001017.g ID=Lus10001017.BGIv1.0 annot-version=v1.0 ATGAAATCAAGGCTGCTGAAGAGACTGATGATCACAATCGGCTACTCTACTGGAGTGACAAAATTGAAGAATGGGACACTGGTTGAGGATGTTCCAGCAG ATTTTCCATTCAAGATGGAGGACAACCCAGGCCAACAGACTCTGACATTGACAAGAGATTACGAGGGTGAACATGTAAAGGTTGAGGTTCACATGCCTGA TCTTGTGACTGGGGAAGAAGATGACGTTCGCAATGATGACGACGATGATGATACCGAAAGGCCAACACAGTCAAGCCTTCCCTTGGTTGTCACCGTCACC AAGAAGAGTGGAATCTCGTTGGAGTTCAGCTGTGTTGCCTTTGCAGATGAGATTTCAATTGACAGCTTGTCCGTTAAAAAACCCGAACATACTGAGGAAA TGGCCTACGACGGTCCTAACTTCCATGATTTGGATGAGAATCTGAAGAATGCTTTCCACAAGTATTTGGAGATACGTGGAATCAAGCCTAGCACAACCAA CTTCCTGCATGAGTATATGATCAACAAAGACAGCAGAGAGTATCTGGGATGGCTGAAAGAACTCAAAAACTTCGTGGAGGCATGA
AA sequence Show only first row Show all	>Lus10001017 pacid=23139334 polypeptide=Lus10001017 locus=Lus10001017.g ID=Lus10001017.BGIv1.0 annot-version=v1.0 MKSRLLKRLMITIGYSTGVTKLKNGTLVEDVPADFPFKMEDNPGQQTLTLTRDYEGEHVKVEVHMPDLVTGEEDDVRNDDDDDDTERPTQSSLPLVVTVT KKSGISLEFSCVAFADEISIDSLSVKKPEHTEEMAYDGPNFHDLDENLKNAFHKYLEIRGIKPSTTNFLHEYMINKDSREYLGWLKELKNFVEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001017 [exp]	0	1
AT3G55605			Mitochondrial glycoprotein fam...		Lus10030157 [exp]	1.0	0.9143
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001015 [exp]	1.4	0.9007
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10029401 [exp]	1.7	0.8999
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10012994 [exp]	2.6	0.8711
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10032390 [exp]	2.8	0.8874
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	3.2	0.8810
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10022629 [exp]	6.0	0.8540
AT2G02590			unknown protein		Lus10013278 [exp]	6.3	0.8561
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	7.7	0.8390
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018394 [exp]	8.1	0.8738

Compare expression of checked genes

Lus10001017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.