Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55610 524 / 0 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) AT2G39800 520 / 0 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030158 [exp] 622 / 0 AT3G55610 1089 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001016 [exp] 551 / 0 AT3G55610 497 / 7e-173 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10004697 [exp] 510 / 0 AT3G55610 515 / 4e-180 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040264 [exp] 488 / 6e-172 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040263 [exp] 483 / 4e-169 AT3G55610 481 / 1e-162 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10005468 [exp] 163 / 2e-48 AT3G55610 170 / 2e-49 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198400 [exp] 551 / 0 AT2G39800 1054 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) Potri.008G060200 [exp] 533 / 0 AT2G39800 1009 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001018 pacid=23139330 polypeptide=Lus10001018 locus=Lus10001018.g ID=Lus10001018.BGIv1.0 annot-version=v1.0 ATGGAAGATCCAGTTGGTCATGTATTGAAAACTACTGAACTCGCGGAGGGCCTTGTCTTAGAGAAGACATCATCTCCTTTAGGTGTTCTCCTGATTGTGT TTGAGGCTCGACCTGATGCACTAGTTCAGATAGCTTCATTGGCGATACGCAGTGGAAATGGTCTCTTACTGAAAGGTGGAAAAGAGGCCAGGCGATCAAA TGCAATTTTGCACAAGGTAATCACTGATGCAATTCCTGACGAAGTTGGGGGAAGACTTATCGGACTTGTGACTTCGAGAGACGAAATTCCTGACCTCCTT AAGCTTGATGATGTGATTGATCTTGTGATTCCTAGAGGCAGCAACAAACTGGTTTCTACTATCAAAGCATCAACTAAAATTCCTGTTCTGGGTCATGCCG ATGGAATTTGTCATGTATATGTTGACAAGTCTGCTAATATAACAACTGCGAAGCGTATTGTGCTGGATGCAAAAGTAGATTATCCAGCTGCCTGTAATGC AATGGAAACGCTTTTGGTGCACAAGGATTTAGTGCCCACTAAAGGTCTAACCGAGCTAATAGTTGGGCTTGGGAGTGAAGGTGTCATTCTATATGGCGGG CCTAGGGCAAGCAAGCAGCTAAGCATTCCAGAGACAGCCTCATTGCATCACGAGTACAGCTCCCTGGCATGCACTGTTGAGATAGTTGATGACGTCCATG CTGCCATTGAACACATACATCGACATGGAAGTGCACATACTGATTGCATCGTTGCTGAAGACAGAGAAGTTGCAGAGACATTTTTGCGACAAGTTGACAG TGCTGCTGTTTTCCACAATGCGAGCACAAGATTCTGCGATGGAGCTCGATTTGGATTGGGGGCAGAGGTTGGAATAAGTACGAGTAGAATCCATGCTCGA GGCCCTGTCGGAGTTGAAGGACTGTTAACGACCCGGTGGATATTGAGAGGCAGTGGACAAGTAGTGGATGGTGATAAGGGAGGGCAGCTTCCGATCCATG ACCAGAAGAGTGATCTGGTTGAGTTGGAACGTGGAGTGAGGGTTTGA
AA sequence Show only first row Show all	>Lus10001018 pacid=23139330 polypeptide=Lus10001018 locus=Lus10001018.g ID=Lus10001018.BGIv1.0 annot-version=v1.0 MEDPVGHVLKTTELAEGLVLEKTSSPLGVLLIVFEARPDALVQIASLAIRSGNGLLLKGGKEARRSNAILHKVITDAIPDEVGGRLIGLVTSRDEIPDLL KLDDVIDLVIPRGSNKLVSTIKASTKIPVLGHADGICHVYVDKSANITTAKRIVLDAKVDYPAACNAMETLLVHKDLVPTKGLTELIVGLGSEGVILYGG PRASKQLSIPETASLHHEYSSLACTVEIVDDVHAAIEHIHRHGSAHTDCIVAEDREVAETFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHAR GPVGVEGLLTTRWILRGSGQVVDGDKGGQLPIHDQKSDLVELERGVRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001018 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002547 [exp]	2.6	0.8675
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Lus10019878 [exp]	3.0	0.8898
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	3.5	0.8849
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001019 [exp]	4.0	0.8671
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10012436 [exp]	5.2	0.8865
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10039405 [exp]	7.1	0.8629
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001016 [exp]	10.0	0.8800
					Lus10025501 [exp]	10.3	0.8867
AT2G17080			Arabidopsis protein of unknown...		Lus10025121 [exp]	16.0	0.8556
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	18.5	0.8620

Compare expression of checked genes

Lus10001018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.