Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39800 441 / 2e-150 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) AT3G55610 436 / 1e-149 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030158 [exp] 602 / 0 AT3G55610 1089 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10004696 [exp] 499 / 6e-177 AT3G55610 492 / 3e-170 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040262 [exp] 486 / 2e-172 AT3G55610 480 / 3e-166 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040263 [exp] 383 / 2e-129 AT3G55610 481 / 1e-162 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198400 [exp] 491 / 9e-170 AT2G39800 1054 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) Potri.008G060200 [exp] 461 / 4e-158 AT2G39800 1009 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10001019 pacid=23139341 polypeptide=Lus10001019 locus=Lus10001019.g ID=Lus10001019.BGIv1.0 annot-version=v1.0 ATGAACGACGCCGACCAAAGCTCGAGAGGCTTTGTTAAGGATGTGAAGCGTCTCGTTGTCAAAGTTGGGACTGCCGTTGTCACTAGAGGTGATGGGAGAT TGGCGCTTGGGAGATTAGGGGCTCTCTGTGAGCAGATTAAAGAGCTCAATTACCAGCACTATGAAGTCATTGTTGTCACGTCTGGCGCTGTTGGCCTTGG CCGTCAAAGGCTAAAATACCGCAAATTAGTCAATAGCAGTTTTGCTGATCTTCAGAAGCCGCAGGGTGATCTCGATGGCAAGGCTTGTGCTGCTGTTGGC CAAAACAGTATCATGGCTCTATATGACACATTGTTCAGTCAGCTGGATGTATCATCTGCTCAACTTCTTGTGACTGATAATGATTTTAGGGATAGAGATT TCAGGAAGCAACTTAAGGAAACTGTTGAGTCACTGCTATCCCTTAGGGTGGTTCCCATTTTCAACGAAAATGATGCAGTCAGTACCAGGAAAGCTCCTTA TGAGGATTCTTCTGGTATATTCTGGGATAACGACAGTTTGGCTGCTTTGTTGGCATTGGAGCTGAAGGCTGATCTCCTTGTTCTGCTCAGTGATGTGGAC GGCCTTTATAGTGGTCCACCAAGCGACCCAAATTCAAAGCTGATTCGTACATACATTAAAGAAGTACATATGGGTGGAATTACGTTTGGAGACAAATCCA GACTTGGAAGAGGAGGCATGACAGCCAAAGTTAAAGCTGCCGTCAATGCCTCTAATGCAGGTGTTCCTGTTATTATCACCAGTGGATATGCTCCTGAGAA TATAATCAAAGTCCTCCAAGGAGATGCTATTGGCACCCTCTTCCATCGCGATGCTCATTTGTGGGTTACATGCAAAGAAACCGATGCACGTGACATGGCA GTTGCAGCAAGGGAATGTTCCAGACGGCTGCAGGCATTATCCTCAGAAGACAGGAAAAATATTTTGCTGGAGATAGCCAATGCCCTCGAAGCCAATGAGA GAATAATCAAGGTTGAAAATGATGCAGATGTTGCTGCTGCAGAAGAGGCTGGTTTGGAGAAACCCTTGATAGCAAGACTTGCTCTAAAGCCTGGGAAGGC AAGACAACGTTTTGTTGCATAG
AA sequence Show only first row Show all	>Lus10001019 pacid=23139341 polypeptide=Lus10001019 locus=Lus10001019.g ID=Lus10001019.BGIv1.0 annot-version=v1.0 MNDADQSSRGFVKDVKRLVVKVGTAVVTRGDGRLALGRLGALCEQIKELNYQHYEVIVVTSGAVGLGRQRLKYRKLVNSSFADLQKPQGDLDGKACAAVG QNSIMALYDTLFSQLDVSSAQLLVTDNDFRDRDFRKQLKETVESLLSLRVVPIFNENDAVSTRKAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVD GLYSGPPSDPNSKLIRTYIKEVHMGGITFGDKSRLGRGGMTAKVKAAVNASNAGVPVIITSGYAPENIIKVLQGDAIGTLFHRDAHLWVTCKETDARDMA VAARECSRRLQALSSEDRKNILLEIANALEANERIIKVENDADVAAAEEAGLEKPLIARLALKPGKARQRFVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001019 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014712 [exp]	2.2	0.8415
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10043468 [exp]	2.2	0.8723
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020080 [exp]	3.5	0.8669
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001018 [exp]	4.0	0.8671
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10001798 [exp]	8.1	0.8228
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10008459 [exp]	8.8	0.8123
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	13.1	0.8662
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	19.4	0.8323
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	21.6	0.8031
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	23.7	0.8382

Compare expression of checked genes

Lus10001019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.