Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39805 282 / 6e-95 Integral membrane Yip1 family protein (.1.2) AT5G27490 138 / 1e-38 Integral membrane Yip1 family protein (.1) AT3G05280 117 / 1e-30 Integral membrane Yip1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030159 [exp] 343 / 2e-118 AT2G39805 256 / 6e-85 Integral membrane Yip1 family protein (.1.2) Lus10004695 [exp] 331 / 3e-114 AT2G39805 324 / 2e-112 Integral membrane Yip1 family protein (.1.2) Lus10004473 [exp] 133 / 8e-37 AT5G27490 474 / 4e-171 Integral membrane Yip1 family protein (.1) Lus10029935 [exp] 131 / 6e-36 AT5G27490 473 / 8e-171 Integral membrane Yip1 family protein (.1) Lus10015189 [exp] 128 / 7e-35 AT5G27490 464 / 4e-167 Integral membrane Yip1 family protein (.1) Lus10031511 [exp] 125 / 1e-33 AT5G27490 462 / 3e-166 Integral membrane Yip1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060300 [exp] 323 / 5e-111 AT2G39805 335 / 1e-116 Integral membrane Yip1 family protein (.1.2) Potri.010G198300 [exp] 311 / 2e-106 AT2G39805 321 / 9e-111 Integral membrane Yip1 family protein (.1.2) Potri.005G033900 [exp] 124 / 3e-33 AT5G27490 468 / 2e-168 Integral membrane Yip1 family protein (.1) Potri.013G023400 [exp] 118 / 4e-31 AT5G27490 423 / 6e-151 Integral membrane Yip1 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001020 pacid=23139331 polypeptide=Lus10001020 locus=Lus10001020.g ID=Lus10001020.BGIv1.0 annot-version=v1.0 ATGGAGGACGACTCCTTCACTAACCTCCCTACTAGCCACTTGATTGGCTCCGTCCCCGCTGCGGTGACTGAAGAAAAAAGTCCTAAAAACTATGAAGTCC CCGTGGCAAATATGCAGACGTTCCCTCCAGTCAGTAATGCACGGGGAAGCGGAATAGGTGGCAGCAGCAGCAGCAGCAACAACAACAGAGGTTATCAAAC TATGGGAGCTCCGACTGATGGAGTTGAACAACAAGGACCGCCAACCACTTGGAAGGGAGTATTTAGTATCTCATCGTATATACAATATTTCAATGTCGAT ACGGATATTGTCGTGAACAGATTGATGAGCTCCTTCTATCCCATAGGGGGTGATTTCTTCAGCAAGATCGATGCCAATCCAGACTTGTGGGTTTGCCCTC ATTCAGCTTCTATTTTTTACTGGGAAGGCTTAGCCAGAAGCATGCATCCTTCATACTCACTAGCGCTAGTTTGTTATCGTGCCAGATATGGACTGGTTTG GATATCAACAACGCTGGTATTCCTTCTTTCCTATCTAGGAAACTTTGCAACCTATCTAATGCTGAGACACGCAGACCGCAGTGCTTCCTGGAGCTTTGAC GTTGGATACGTAAATGCAGCGGCAGTTGCCATCTATGGTTATGCAATCATTGTTCCGATGGGTTTTTACTTCTTGCTTCAGTATCTTGGACTGAGTGCAA GCCTGATACGATTTTGGTGCATGTGGGGATATTCTCTCTTCATATTCGTCCTATGTTCTGTACCAATGATTATCCCTGTAGAGTTTCTACGGTGGGTGAT CATACTGGCAGCTGGAGTTGATTCAGCTTGCTTCGTGACTGCAAATCTGAAAACAGTCGTGCAAGGAGGTGATCTTACAATCGTGTTGGTAGCGTCATTT GTATTGCAACTGGCTCTATCGATCTTCATCAAGGTCTGGTTCTTTCCCTAA
AA sequence Show only first row Show all	>Lus10001020 pacid=23139331 polypeptide=Lus10001020 locus=Lus10001020.g ID=Lus10001020.BGIv1.0 annot-version=v1.0 MEDDSFTNLPTSHLIGSVPAAVTEEKSPKNYEVPVANMQTFPPVSNARGSGIGGSSSSSNNNRGYQTMGAPTDGVEQQGPPTTWKGVFSISSYIQYFNVD TDIVVNRLMSSFYPIGGDFFSKIDANPDLWVCPHSASIFYWEGLARSMHPSYSLALVCYRARYGLVWISTTLVFLLSYLGNFATYLMLRHADRSASWSFD VGYVNAAAVAIYGYAIIVPMGFYFLLQYLGLSASLIRFWCMWGYSLFIFVLCSVPMIIPVEFLRWVIILAAGVDSACFVTANLKTVVQGGDLTIVLVASF VLQLALSIFIKVWFFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39805			Integral membrane Yip1 family ...		Lus10001020 [exp]	0	1
AT5G53310			myosin heavy chain-related (.1...		Lus10027569 [exp]	3.7	0.7344
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	42.0	0.6754
AT1G75980			Single hybrid motif superfamil...		Lus10005613 [exp]	75.0	0.5832
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Lus10005352 [exp]	78.6	0.6609
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10031436 [exp]	98.3	0.6443
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10040216 [exp]	109.5	0.6345
AT2G39805			Integral membrane Yip1 family ...		Lus10030159 [exp]	135.8	0.6228
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10039293 [exp]	137.6	0.6276
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	176.8	0.6128
AT4G01810			Sec23/Sec24 protein transport ...		Lus10010078 [exp]	184.3	0.5980

Compare expression of checked genes

Lus10001020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.