Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05987 274 / 4e-94 PRA1.A2 prenylated RAB acceptor 1.A2 (.1) AT3G11397 274 / 4e-94 PRA1.A3 prenylated RAB acceptor 1.A3 (.1) AT5G02040 262 / 2e-89 PRA1.A1 prenylated RAB acceptor 1.A1 (.1.2) AT3G11402 273 / 3e-86 Cysteine/Histidine-rich C1 domain family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030160 [exp] 373 / 4e-133 AT5G05987 308 / 1e-107 prenylated RAB acceptor 1.A2 (.1) Lus10022592 [exp] 268 / 8e-92 AT5G02040 298 / 9e-104 prenylated RAB acceptor 1.A1 (.1.2) Lus10021492 [exp] 268 / 2e-91 AT5G02040 297 / 1e-103 prenylated RAB acceptor 1.A1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198000 [exp] 309 / 7e-108 AT5G05987 253 / 3e-86 prenylated RAB acceptor 1.A2 (.1) Potri.008G060400 [exp] 308 / 2e-107 AT3G11397 266 / 4e-91 prenylated RAB acceptor 1.A3 (.1) Potri.006G091300 [exp] 282 / 3e-97 AT5G02040 320 / 1e-112 prenylated RAB acceptor 1.A1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10001021 pacid=23139332 polypeptide=Lus10001021 locus=Lus10001021.g ID=Lus10001021.BGIv1.0 annot-version=v1.0 ATGGATTGGGGAAGTGTAACGGCCGATGATCTGGTCGGAGCTCTAAGAGAAGTCGACTGGTCCACTCCGCCTCGTCCTCTCAGCGAATTCTTCTCCAGAT TCAACATCAGCAGATCTTACTCCAAGTGGAGCAGCCGCCTCAAGTGCAATCTCTATTATTACAGGACGAACTACTTCATTATGATTGTATTCATTCTCGG TATTGCCTGTATCATGAGGCCCTTGGCTATCGTTGCTGCTGCTTTGACAGCTCTAAGCTTTGCTTTTCTTAACGATAGATGTTGCCCGAAATTTAATGGG GCTGAGCTAATAACAGTTCCATTGTGCAGTTTTGCGACCACTTTTAGTGAGAAGACGACAAGAACTGTTAGGAAGTTTTCTCCTCATTTGGCAGCAAAGA TGAGACCTTCTCACATGCCGGTCATCCGAGGTCGCCCATCATCAAAGAAGACATTATACATCTGTGGTCAGCCTCGTGGGGCGTTTGTGTTTCTTTTCAC TTCTGCCAGTTTGATCATGTGGTTTGCTTCTGGCAGCTTGTCCACTGTTTTGTGGGCACTCGTGATTGCCCTCCTGGCGACCATCATCCATGCAAGTGTG AGAACACCTAATCTCAAAGCAAGACTGAATACATTCAGGGAGGAGTTCCGCTCTGTCTGGCGCAACTACAGTGACCTCTGA
AA sequence Show only first row Show all	>Lus10001021 pacid=23139332 polypeptide=Lus10001021 locus=Lus10001021.g ID=Lus10001021.BGIv1.0 annot-version=v1.0 MDWGSVTADDLVGALREVDWSTPPRPLSEFFSRFNISRSYSKWSSRLKCNLYYYRTNYFIMIVFILGIACIMRPLAIVAAALTALSFAFLNDRCCPKFNG AELITVPLCSFATTFSEKTTRTVRKFSPHLAAKMRPSHMPVIRGRPSSKKTLYICGQPRGAFVFLFTSASLIMWFASGSLSTVLWALVIALLATIIHASV RTPNLKARLNTFREEFRSVWRNYSDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	0	1
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	1.0	0.9255
AT5G32440			Ubiquitin system component Cue...		Lus10039988 [exp]	1.7	0.9038
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	2.0	0.9178
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10031101 [exp]	3.5	0.8924
AT5G43100			Eukaryotic aspartyl protease f...		Lus10018709 [exp]	3.5	0.8799
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	4.5	0.8852
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	4.9	0.8774
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018287 [exp]	7.7	0.8707
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	10.2	0.8789
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	10.4	0.8763

Compare expression of checked genes

Lus10001021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.