Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05980 577 / 0 ATDFB, FPGS1 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) AT3G10160 491 / 2e-169 ATDFC, FPGS2 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) AT3G55630 484 / 3e-168 ATDFD, FPGS3 folylpolyglutamate synthetase 3, DHFS-FPGS homolog D (.1.2.3) AT5G41480 100 / 1e-22 EMB9, ATDFA, GLA1 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030161 [exp] 890 / 0 AT5G05980 696 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10040261 [exp] 728 / 0 AT5G05980 723 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10004694 [exp] 715 / 0 AT5G05980 694 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10038824 [exp] 94 / 2e-20 AT5G41480 553 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) Lus10014939 [exp] 92 / 2e-19 AT5G41480 558 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060600 [exp] 665 / 0 AT5G05980 724 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.010G197800 [exp] 642 / 0 AT5G05980 686 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.016G041800 [exp] 488 / 5e-168 AT3G10160 708 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.006G045400 [exp] 481 / 2e-164 AT3G10160 705 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.015G022400 [exp] 93 / 7e-20 AT5G41480 570 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001023 pacid=23139336 polypeptide=Lus10001023 locus=Lus10001023.g ID=Lus10001023.BGIv1.0 annot-version=v1.0 ATGGCGGACGGCGACAATGAATCCGGAAGACCGTACGATAAGGCAATGGACGCTTTGTCTTCTTTGATAACAAAGCGGAGTCGTGGTGATAAGAGCACCA AAGGAGATGGATTCCATTTTCTCTTCGATTACCTCAAGATACTGGACCTGGAGGATGCGTTGGCGGATTTAAAAATTGTTCATGTGGCAGGCACCAAAGG GAAGGGATCCACATGTACCTTCACGGAGTCTATACTAAGGAATTGTGGCTTTAGAACAGGGCTTTTCACATCACCTCACCTCATTGATGTCAGAGAAAGG TTTCGATTGGATGGCGCTGATATATCCGAGGAGAAGTTTTTGATCTATTTCTGGTGGTGTTTCAACAGATTAAAGGAAAGGACAACAAAAGATTTACCGA TGCCTCCTTTGTTTCGTTTTCTTACATTGCTTGCCTTCAAGATCTTTGCAGCAGAGCAGGTAGACGTTGCAATATTAGAAGTTGGACTGGGTGGAAGGTT TGACGCGACAAATGTGCATGGTGTTCCTGCTTTTACAGTCCAGCAACCTGAGGAAGCAATGTGTGTGCTTAAAGAGAAAGCATCAAGTTTAAATGTAGAT CTTCAAGCTGTGCTCCCGTTGGATGCCAATTTACTTAACGGCCTAAAACTTGGACTTGAAGGTGAGCACCAATATGTCAATGCTGGTCTGGCCATTTCAC TTTCTTTCAATTGGCTAAAGAGGACAGGGCATCTTGGACTTGCCAACCAGGAACACACTGGCTCACTACCTAAGCAGTTTATCAAGGGCTTGACAACAGC TAGTTTTCAAGGCCGGGCTCAAATCGTTCGTGATCAATATGTAGATAATGAAAATGACGGGGACCTCATCTTTTATTTGGATGGTGCCCACAGTCCCGAA AGCATGGATATATGTGCAAGATGGTTTTCTGGTGCTGTTAAAGGTGGAAAGGGGCATGATACAGTCACACCCCAATTGAGTTCATCTACACATCAATTAA AGAAGAATATCATGCAGATACTCTTGTTCAACTGTATGACAGTGCGTGATCCTCAGTTGCTTCTTCCACCATTATTGAAAACATGTTCTAGTCAAGGTGT CTACTTTAAGAAGGCACTGTTCGTACCAAATATGTCGGTTTACCATAAGGTCGGAACTCCTTCGTTACCATCATCTGATACTAAAGTTGATTTGTCATGG CAGACTGCTCTTCAAAGAGTGTGGGAAAATGCCGTGAAGAATAGAAATGGAAGGGAGACAAATGCGTCCGAGGAAATAAAGAATGATTCAGGAGCAAGTG CTGGGAGTTGTGAGAAAACTGCAGTCTTTCCTTCTCTACCTTTGGCTATCAAATGGCTGAGAGACAGTGTCAAACAGAATCAGTCTGTCCGGTTCCAGGT CCTTGTTACAGGTTCGTTACATCTCATTGGTGATGTATTGAAACTAATAAGGAAATAG
AA sequence Show only first row Show all	>Lus10001023 pacid=23139336 polypeptide=Lus10001023 locus=Lus10001023.g ID=Lus10001023.BGIv1.0 annot-version=v1.0 MADGDNESGRPYDKAMDALSSLITKRSRGDKSTKGDGFHFLFDYLKILDLEDALADLKIVHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRER FRLDGADISEEKFLIYFWWCFNRLKERTTKDLPMPPLFRFLTLLAFKIFAAEQVDVAILEVGLGGRFDATNVHGVPAFTVQQPEEAMCVLKEKASSLNVD LQAVLPLDANLLNGLKLGLEGEHQYVNAGLAISLSFNWLKRTGHLGLANQEHTGSLPKQFIKGLTTASFQGRAQIVRDQYVDNENDGDLIFYLDGAHSPE SMDICARWFSGAVKGGKGHDTVTPQLSSSTHQLKKNIMQILLFNCMTVRDPQLLLPPLLKTCSSQGVYFKKALFVPNMSVYHKVGTPSLPSSDTKVDLSW QTALQRVWENAVKNRNGRETNASEEIKNDSGASAGSCEKTAVFPSLPLAIKWLRDSVKQNQSVRFQVLVTGSLHLIGDVLKLIRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10001023 [exp]	0	1
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10030161 [exp]	1.0	0.8065
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Lus10007987 [exp]	3.7	0.6766
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009643 [exp]	12.4	0.6543
AT4G05090			Inositol monophosphatase famil...		Lus10006739 [exp]	15.9	0.6064
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	27.6	0.6212
AT2G36360			Galactose oxidase/kelch repeat...		Lus10034159 [exp]	42.7	0.5601
AT3G56160			Sodium Bile acid symporter fam...		Lus10043384 [exp]	43.3	0.6345
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	52.5	0.6104
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002604 [exp]	55.6	0.5975
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	62.0	0.5920

Compare expression of checked genes

Lus10001023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.