Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05970 793 / 0 NEDD1 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 57 / 1e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 56 / 8e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G62020 54 / 5e-07 Coatomer, alpha subunit (.1) AT1G15440 53 / 8e-07 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT5G16750 52 / 2e-06 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT1G61210 52 / 2e-06 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 52 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 51 / 3e-06 TAF5 TBP-associated factor 5 (.1) AT2G43770 50 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030162 [exp] 1395 / 0 AT5G05970 846 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10040260 [exp] 968 / 0 AT5G05970 766 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004693 [exp] 899 / 0 AT5G05970 714 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 65 / 6e-11 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 64 / 6e-10 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10014674 [exp] 58 / 9e-09 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10015340 [exp] 59 / 1e-08 AT2G47990 594 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10006916 [exp] 57 / 2e-08 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017890 [exp] 57 / 6e-08 AT2G47990 584 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060700 [exp] 971 / 0 AT5G05970 862 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G197700 [exp] 950 / 0 AT5G05970 826 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 65 / 6e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 64 / 8e-11 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G060500 [exp] 59 / 1e-08 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.007G009500 [exp] 57 / 2e-08 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 56 / 1e-07 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.010G255400 [exp] 54 / 3e-07 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 54 / 3e-07 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.001G173500 [exp] 54 / 3e-07 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001024 pacid=23139339 polypeptide=Lus10001024 locus=Lus10001024.g ID=Lus10001024.BGIv1.0 annot-version=v1.0 ATGATGAAGCTGGCGGATCCATATCCACCAATGGCCCTACTCGCCGCTACTGGCGGTGACACCGTCAAGCTATTCGATGTTTCAGTTGAGTCTGGAGACC CTTGCGCTTTGAGTTACACTCCCTCTCCAGGTCTCCTTGTCAACTCCGTCAAGTGGAACCACACCAATTTAGTAGTTGCAAGTGCTGGAGAAGACAAGAA GATCTCGCTATGGAGGAAAAATGGTCAGAGCATCGCCACCATTCCCGTCTCTGGGTCCGACGTTGGAGATGCCATTGAGGAATCTATATTGGCTATTAAC TTCAGCAATAAAGGATCCAGATATTTATGTTCTGGTGGAAGTGGCAAAGTGGTACGAATATGGGATCTACAGAGGAAACTATGCATTAAACGTTTAATGG GCCATACAAATACAATAACGGGAACTATGTACAACAGCAAAGATGAGCACTTGGCTTCCATAAGTCAAAGTGGTGATCTCATCATTCACAACCTTGCATC TGGTGGAAGAGCTGCCGAATTGAAGGACCCTAACAACCAGGTCTTGAGGGTGTTGGATTATTCACGGCTCAGCCGTCACCTCTTGGCTACTGCGGGTGAT AATGGATCAATACATTTATGGGATACTACGGGTCGCCTTCCAAAGAATTCATGGTTGAAACAACATTCTGCTCCAACAGCTGGTGTTAGCTTCTCCCCTT CCAATGACAAGATTATAGCAAGTGTTGGTCTGGACAAAAAATTGTATACTTATGATTCTGCATCTCGACGGTTCTCATCTTGTATTTCTTATGAAGCACC ATTTTCCTCACTGGCATTTAGAGAAGATGGATTGGTTCTTGCAGCTGGAACCGGTAATGGCAGGGTGGTATTTTATGATGTCCGTGGAAAACCACAACCC TTTACAGTTCTTCGTGCTTATAGCAGCTCAGAGGCTGTTACAAGCTTGTGCTGGCAAAGATCAAAACCAGTTGTTGTAAATGAGAACTGTACAGCAGAGA CTGCTCTTCTTGGTGGATCTGTAGAAGATTCTATACTTATGCCTGATCCACTTCCCTCTGTGACATCTTCTAATGCTTCAATACCAACAGCAGTGTTTGC TTCTAGAAATGCTAGCCGTTCAGAAACGGTTAGTGGATCAACCTTGCCGGCTGTATCTTTTGCCGAAGAGACACCTATTAGGCGCCCAGTTGGACCATTA ACGAGATTAAAAGCTCCACGCAGTGATTATAACTTCAAGGATGACATGGAGGTATTCTCCCCACTTGTGGAGGTTCAGCCTATCACACCTTCCCTTGATA AGCTTTGGGATATTCACGAGGTGTCAAAAATCGATAATCTGTTAGGTGATAAGAAGCCTTCATCCTTTGTTTTCCCTTCATCAAGTAGAAGATATCCTTC CGCTGAAGATACAATCACTGAGCATCCAATATATGATTGGAAACCCGGCTCAACTTCTAGACAGGATGATACCCGACCATACCTAGGCTTTCGAGGTGGG TCCACTCCTCCTACATCCGCTGAAAGTACAGAAACCTCAATTACTCCCCCAGAAGCATGGGGCGGTGAGAGATTTGATAAGATCACAAACCTCCGTCCGA CATCCGATCTTCCATCTCGTTTTGGGATGTCAACTTCTGGAAGTTTTACTTCAGGGTCCATGATTCCAGGGATGCAAGACATATCTTCTACAAAGAATCA GACAAGTATGACCTCATTAACCACTAATTTTCCAAATATGAGAGCCAGAGATGTTTCTGCTAGTCAGGAGACATCAATTGGATTCCCAGAACAACTTTCT CCTGGTCCTTTGTCCCCAATTCTAGGATCTACGAAAGGCATTGTTGGATTAACTAACACTGAAGTATCAGGGCTAGCATCATTAAGTCTAACCCGTAGAT ATTCGACTTATGCGGAGAGAATTAGCACAGCCTCTGCTTTTAGTGATGGGACATCCCTTGGGGTAGCTTCACCAAAAGTGAAGAAAATGGGATCCGAGAC CAGGGAAGACCTCTTGAACAGCCTCTCCTCACGGTCCGACACATTGGCAGGCACTGAACCAGTTTTTCCAGTAGTAAATGGAGGGATAGCACAAACTCTC AAGCCTCTTCAACCCGATACGCAGCAGCATGGAAGTTCCTTCCCTCTCCAGCTCTTCCAACGTACACTTGAAGAAACTTTGGGTTCTTTCAGAGATTCGA TGCGGGAAGACATGAGGAACCTTCACATTGAAATTCTAAGACAATTTCATATGCAAGAGAGCTTATATCTGGGGAACCAGGCTGAGATGATGAAGAAAAT CGAGTCCCTCCAGAAGGAAAACCAAGAGCTCCTCCAACAGTTGAGACGATAA
AA sequence Show only first row Show all	>Lus10001024 pacid=23139339 polypeptide=Lus10001024 locus=Lus10001024.g ID=Lus10001024.BGIv1.0 annot-version=v1.0 MMKLADPYPPMALLAATGGDTVKLFDVSVESGDPCALSYTPSPGLLVNSVKWNHTNLVVASAGEDKKISLWRKNGQSIATIPVSGSDVGDAIEESILAIN FSNKGSRYLCSGGSGKVVRIWDLQRKLCIKRLMGHTNTITGTMYNSKDEHLASISQSGDLIIHNLASGGRAAELKDPNNQVLRVLDYSRLSRHLLATAGD NGSIHLWDTTGRLPKNSWLKQHSAPTAGVSFSPSNDKIIASVGLDKKLYTYDSASRRFSSCISYEAPFSSLAFREDGLVLAAGTGNGRVVFYDVRGKPQP FTVLRAYSSSEAVTSLCWQRSKPVVVNENCTAETALLGGSVEDSILMPDPLPSVTSSNASIPTAVFASRNASRSETVSGSTLPAVSFAEETPIRRPVGPL TRLKAPRSDYNFKDDMEVFSPLVEVQPITPSLDKLWDIHEVSKIDNLLGDKKPSSFVFPSSSRRYPSAEDTITEHPIYDWKPGSTSRQDDTRPYLGFRGG STPPTSAESTETSITPPEAWGGERFDKITNLRPTSDLPSRFGMSTSGSFTSGSMIPGMQDISSTKNQTSMTSLTTNFPNMRARDVSASQETSIGFPEQLS PGPLSPILGSTKGIVGLTNTEVSGLASLSLTRRYSTYAERISTASAFSDGTSLGVASPKVKKMGSETREDLLNSLSSRSDTLAGTEPVFPVVNGGIAQTL KPLQPDTQQHGSSFPLQLFQRTLEETLGSFRDSMREDMRNLHIEILRQFHMQESLYLGNQAEMMKKIESLQKENQELLQQLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10001024 [exp]	0	1
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10006269 [exp]	1.7	0.8238
AT5G36930			Disease resistance protein (TI...		Lus10001039 [exp]	4.0	0.8002
AT5G36930			Disease resistance protein (TI...		Lus10001040 [exp]	14.7	0.7735
AT4G11790			Pleckstrin homology (PH) domai...		Lus10006338 [exp]	17.6	0.7947
AT4G24020		NLP7	NIN like protein 7 (.1)		Lus10023049 [exp]	19.4	0.7112
AT5G36930			Disease resistance protein (TI...		Lus10008026 [exp]	26.7	0.7735
AT4G11670			Protein of unknown function (D...		Lus10029581 [exp]	28.8	0.7886
AT1G44790			ChaC-like family protein (.1)		Lus10028029 [exp]	46.1	0.7842
AT1G79020			Enhancer of polycomb-like tran...		Lus10034778 [exp]	47.0	0.7855
AT5G59830			unknown protein		Lus10024426 [exp]	47.6	0.7230

Compare expression of checked genes

Lus10001024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.