Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39840 602 / 0 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G59160 558 / 0 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT2G29400 548 / 0 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT3G46820 536 / 0 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT1G64040 521 / 0 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 516 / 0 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G43380 500 / 5e-180 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G27840 479 / 6e-172 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G05580 476 / 1e-170 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G55260 288 / 1e-96 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030163 [exp] 652 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 629 / 0 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 625 / 0 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004989 [exp] 565 / 0 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10016489 [exp] 562 / 0 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10022019 [exp] 561 / 0 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10042559 [exp] 560 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10011827 [exp] 520 / 0 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10021872 [exp] 519 / 0 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197600 [exp] 625 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G060800 [exp] 623 / 0 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G045900 [exp] 569 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 557 / 0 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.009G037700 [exp] 555 / 0 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.001G245700 [exp] 555 / 0 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.008G166300 [exp] 543 / 0 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G098600 [exp] 531 / 0 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.016G142700 [exp] 493 / 1e-177 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1) Potri.006G113100 [exp] 486 / 2e-174 AT2G39840 488 / 4e-175 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10001025 pacid=23139343 polypeptide=Lus10001025 locus=Lus10001025.g ID=Lus10001025.BGIv1.0 annot-version=v1.0 ATGGCATCACAAGGACAGACGGCGGCTATGGACCTTGCCGTCCTCGACGACATAATCAAACGGTTGACGGAGGTCCGATCAGCCAGGCCCGGAAAGCAGG TACAGCTCTCCGAGTCTGAGATCAAGCAGCTATGTGCTGCCTCTCGTGATGTCTTCCTTCACCAGCCCAACTTGCTCGAGCTCGAGGCTCCCATCAAAAT TTGCGGCGACATTCATGGGCAATACAGCGACTTGTTGAGGCTTTTTGAGTATGGAGGTTTTCCACCGGAGGCCAACTATTTATTCCTAGGAGACTATGTT GATCGTGGTAAACAGAGCTTGGAGACCATATGTCTATTACTTGCCTACAAGATTAAGTATCCTGAGAACTTCTTCCTTCTGCGAGGAAACCATGAATGTG CTTCTATAAACCGCATTTATGGATTCTATGATGAGTGCAAGAGGCGGTTCAATGTGAGGCTTTGGAAATCTTTCACTGACTCTTTTAATTGCCTTCCTGT CGCTGCTCTCATAGATGACAAAATATTATGCATGCATGGTGGTCTTTCCCCTGATTTGACACATTTAGATCAAATCAGAAACTTGCCTCGCCCCACCGCT ATTCCCGACACTGGTTTGCTGTGCGATCTGCTTTGGTCAGATCCGGGTAGAGACGTCAAGGGTTGGGGAATGAATGACAGAGGAGTTTCATATACCTTTG GCCCTGATAAAGTGTCTGAAGTCTTGAACAAGCATGACTTAGACCTTGTCTGTCGTGCTCATCAGGTTGTGGAGGATGGATATGAGTTTTTTGCTGATAG GCAACTGGTCACCATATTCTCAGCTCCCAATTACTGTGGTGAATTCGATAATGCCGGTGCTATGATGAGTGTTGATGAAAACCTGATGTGCTCCTTTCAA ATTCTGAAGCCAGCGGAGAAAAAGGCCAAGTTCATGATGTCAAACAAAATTTGA
AA sequence Show only first row Show all	>Lus10001025 pacid=23139343 polypeptide=Lus10001025 locus=Lus10001025.g ID=Lus10001025.BGIv1.0 annot-version=v1.0 MASQGQTAAMDLAVLDDIIKRLTEVRSARPGKQVQLSESEIKQLCAASRDVFLHQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYV DRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKSFTDSFNCLPVAALIDDKILCMHGGLSPDLTHLDQIRNLPRPTA IPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVSEVLNKHDLDLVCRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDENLMCSFQ ILKPAEKKAKFMMSNKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10001025 [exp]	0	1
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042321 [exp]	4.4	0.9057
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10030992 [exp]	4.5	0.9269
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10035391 [exp]	6.3	0.9170
AT5G36930			Disease resistance protein (TI...		Lus10007825 [exp]	17.6	0.9221
AT3G19910			RING/U-box superfamily protein...		Lus10025691 [exp]	23.0	0.8565
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	24.3	0.9189
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	28.8	0.9125
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10002827 [exp]	34.2	0.9144
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10035914 [exp]	35.9	0.8786
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	36.5	0.9168

Compare expression of checked genes

Lus10001025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.