Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 193 / 5e-58 HXXXD-type acyl-transferase family protein (.1) AT3G03480 171 / 1e-49 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 124 / 2e-32 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 112 / 5e-28 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 104 / 2e-25 HXXXD-type acyl-transferase family protein (.1) AT1G27620 85 / 2e-18 HXXXD-type acyl-transferase family protein (.1) AT1G28680 85 / 3e-18 HXXXD-type acyl-transferase family protein (.1) AT5G07080 85 / 3e-18 HXXXD-type acyl-transferase family protein (.1) AT3G62160 84 / 4e-18 HXXXD-type acyl-transferase family protein (.1) AT2G25150 83 / 1e-17 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 328 / 2e-110 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 302 / 5e-101 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 254 / 1e-83 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 242 / 8e-77 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 218 / 3e-67 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 215 / 2e-66 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 207 / 2e-63 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10026871 [exp] 174 / 3e-49 AT3G09720 673 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012552 [exp] 123 / 6e-32 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043600 [exp] 264 / 2e-85 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 260 / 5e-84 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 250 / 3e-80 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 248 / 1e-79 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 243 / 8e-78 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 241 / 1e-76 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 236 / 1e-74 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G127600 [exp] 221 / 5e-69 AT5G17540 406 / 1e-138 HXXXD-type acyl-transferase family protein (.1) Potri.013G112100 [exp] 215 / 7e-67 AT5G17540 378 / 7e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 204 / 2e-62 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10001027 pacid=23171550 polypeptide=Lus10001027 locus=Lus10001027.g ID=Lus10001027.BGIv1.0 annot-version=v1.0 ATGAGTGACGCCGTTGGCCTAGCTCAGTTCGTGTCCGCACTGGACGAGTTAGCTTGTGGTGCGACAACTCCCTCAGTCATACCTGTTTGGGAAAGACACA TTCTCAACGCTCGCTCCCCACCCTGCGTGACGTTCACACACCGCGAGTATGCAAACGTGGTGGCGGCCGATACAAAATTAGGCACGGTCATCGTCGTCCC TGACCCCGACAACGTCCGAATGGAGCACCGCTCCTTCTTTTTTGGCCCCGCTAAAATATCCGCCCTACGTAGCCACGCGCCTCCACATCTCCGCAACTCC TACTCCCAAATCGAGCTTATCAGCGCCTGCGCCTGGAAGTGTCGGACACTAGCCCTTGGATTTCACCCGGACGATGAGATGTGTTTTATATGCATCGTCA ACGTCCGATACAGGCCCGATTACAAGCCGCTGTTACCGAGGGGGTACTACGGCAACGCGTTGGCGTACCCGACAGCAGCGGCTACCGCCGGTGATCTCTG TCGGAGTCCTCTTGGGTACGCTCTGGATCTGGTGAAGAAGGCGAAATTGGGCGTGACTGTGGAGTACATGAGATCTGTGGCGGATTTCATGGTGACGACG GGGCGCCGATGTAAATTCGCAAGGGTGAGGTCGTACGAGGTGTCTGACGTCACGCGGACTGGGTTGGATGAGGTGGACTTCGGGTGGGGGAAAGCAGCGT ACAGGGGTCCGGTGAGGGGTAGCACTCACGATAGTAGCAAGCTTTTGAGTTGCATACGGGATGGGGAGAAAGGGATACTTTTGCCGATTACATTGCCCGC ACTAGCGATGGAGAGATTTCACAAGGAGCTGGAGAGGATGGTGAAGAAGAAAGCGCCGAATACGTGCATCGAAAATGCGACAAAGAAATCGACAACCATT TTATCAGGTTTGTAA
AA sequence Show only first row Show all	>Lus10001027 pacid=23171550 polypeptide=Lus10001027 locus=Lus10001027.g ID=Lus10001027.BGIv1.0 annot-version=v1.0 MSDAVGLAQFVSALDELACGATTPSVIPVWERHILNARSPPCVTFTHREYANVVAADTKLGTVIVVPDPDNVRMEHRSFFFGPAKISALRSHAPPHLRNS YSQIELISACAWKCRTLALGFHPDDEMCFICIVNVRYRPDYKPLLPRGYYGNALAYPTAAATAGDLCRSPLGYALDLVKKAKLGVTVEYMRSVADFMVTT GRRCKFARVRSYEVSDVTRTGLDEVDFGWGKAAYRGPVRGSTHDSSKLLSCIRDGEKGILLPITLPALAMERFHKELERMVKKKAPNTCIENATKKSTTI LSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10001027 [exp]	0	1
AT5G38200			Class I glutamine amidotransfe...		Lus10016700 [exp]	126.1	0.7877
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10012494 [exp]	254.4	0.7550

Compare expression of checked genes

Lus10001027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.