Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13990 499 / 2e-173 Exostosin family protein (.1) AT2G32750 496 / 2e-172 Exostosin family protein (.1) AT2G20370 476 / 5e-163 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G29040 475 / 2e-161 Exostosin family protein (.1) AT2G32740 450 / 7e-155 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G31990 419 / 2e-142 Exostosin family protein (.1) AT1G68470 324 / 4e-106 Exostosin family protein (.1) AT1G63450 327 / 1e-104 RHS8 root hair specific 8 (.1) AT5G62220 313 / 7e-101 ATGT18 glycosyltransferase 18 (.1) AT5G41250 314 / 1e-100 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007426 [exp] 631 / 0 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10010677 [exp] 628 / 0 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10006694 [exp] 495 / 2e-171 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 493 / 6e-170 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 489 / 2e-168 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10016532 [exp] 483 / 4e-167 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 485 / 2e-166 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10022862 [exp] 482 / 2e-165 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10007037 [exp] 424 / 7e-145 AT4G13990 540 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147800 [exp] 574 / 0 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 512 / 2e-178 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 484 / 2e-166 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.009G032500 [exp] 481 / 2e-164 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G382200 [exp] 336 / 5e-110 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 334 / 2e-109 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 323 / 9e-104 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.001G120800 [exp] 287 / 9e-92 AT4G22580 593 / 0.0 Exostosin family protein (.1) Potri.012G130700 [exp] 286 / 2e-90 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.003G112200 [exp] 275 / 9e-87 AT4G22580 583 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10001028 pacid=23171563 polypeptide=Lus10001028 locus=Lus10001028.g ID=Lus10001028.BGIv1.0 annot-version=v1.0 ATGAAGCTGAGATCCTCACAGATACACTGTTCAAGTGGGCAGCTCTTAATGAAAGATATGGATAAATTCCACACCAAGAAACCAACAAAAAGATACTACA CTACTATTCCACATCTCTTGTTCTTCATACTCATTGCCCCCTTTCTTCTCTTCATCTGTTACTACACTATACATCACACCTCTGTTGAAACAAAAGGGAA CAGACTGGCTTTTCTCTTTACAACCTTATTCCACCGCGATGATGCTTGCTCTGGCCGTTACATCTATGTTCACGATCTCCCAGCCCGTTTCAACACCGAA GTGCTCAAGAGCTGTCGCCACTCGCTGATCAAATGGCTCGACATGTGCCCGTATCTGTCCAACATGGGACTCGGTACTCGAGTTAATGATCATGGTAATG TTTTGATGGAGAAGAGCTGGTACGCGACGTACCAGTTCGTTCTCGAAGTCATTTTCCATCACAGGATGGAGAGCTACGAGTGTTTAACAAACGATTCAAC GTTAGCCTCCGCGATTTTCGTGCCATTCTACGCCGGTTTCGATGTTGGCAGATATCTTTGGGGGTATAACGCAACTACAAGGGATGCATTAGGTGTTGAG CTTGTGAAGTGGCTCAGAAACCAGCCTGAATGGAAGGGGGGAAAAGGGGGGTTGTGGGGGAGAGACCATTTCTTTGTTTCGGGAAGGATTGCTTGGGATC TTCAAAGGCACGATCGTGATGGTTCGGATTGGGGGAGCAAGCTGATGCAGCTTCCCGAATCGATGAACATGACGATGCTGACTGTTGAGACTACTTCTTG GAGCAATGAGTTTGCAGTTCCATACCCGTCGTACTTCCATCCCAAAACAGCTGGTGAAGTACATCAATGGCAGAGGAGAGTCAGGGGACATAAAAGGGAA TACCTTTTCGCCTTTGTGGGCGCCCCGCGAGAGAACATGGCAGGGTCCATCCACGGAGAGCTGATGAAGCAGTGCCTAGCTTCGTCCACGAAGAAATGCA AGCTTCTCAACTGTGCTCCAGTTGGGAAATGTGACAGTCCAGTTACGGTGATGGAAGTGTTCCAGAACGCAGTCTTCTGCCTACAGCCAGCAGGCGATTC TCCAACCAGGAGATCGACATTCGATTCGATCTTGGCTGGGTGCATCCCTGTGTTCTTCCATCCTTACTCAGCTTACGGACAGTACACATGGCATCTGCCG AGAAACTACTCTTTGTATTCCGTTTATATACCGGAAGAGCTGGTCAGGGAAGGGAAAGTCAACGTCGAAGAACGGTTGGTCCGGGTTCCGGAGGCAGATG TTGCGGCCATGAGAGAGGCGGTGATAGAGCTCATTCCGAAGGTGACGTATGCAGATCCCAGATCGGAATCGATGGGATTCGAAGATGCGTTTGGGATAGC GGTTAAAGGAGTTCTGGAAAGAATTGGTAAAGTTAGAAGACAGGTTGAGGAAGGGAATGATCCAGGGACTGGATTTGCTAGACCTGATGGCTGGAAGTTG AAATTGGAGGGTGTAGGAAGTGATCATGAGTGGGATAAGTTCTTGTGA
AA sequence Show only first row Show all	>Lus10001028 pacid=23171563 polypeptide=Lus10001028 locus=Lus10001028.g ID=Lus10001028.BGIv1.0 annot-version=v1.0 MKLRSSQIHCSSGQLLMKDMDKFHTKKPTKRYYTTIPHLLFFILIAPFLLFICYYTIHHTSVETKGNRLAFLFTTLFHRDDACSGRYIYVHDLPARFNTE VLKSCRHSLIKWLDMCPYLSNMGLGTRVNDHGNVLMEKSWYATYQFVLEVIFHHRMESYECLTNDSTLASAIFVPFYAGFDVGRYLWGYNATTRDALGVE LVKWLRNQPEWKGGKGGLWGRDHFFVSGRIAWDLQRHDRDGSDWGSKLMQLPESMNMTMLTVETTSWSNEFAVPYPSYFHPKTAGEVHQWQRRVRGHKRE YLFAFVGAPRENMAGSIHGELMKQCLASSTKKCKLLNCAPVGKCDSPVTVMEVFQNAVFCLQPAGDSPTRRSTFDSILAGCIPVFFHPYSAYGQYTWHLP RNYSLYSVYIPEELVREGKVNVEERLVRVPEADVAAMREAVIELIPKVTYADPRSESMGFEDAFGIAVKGVLERIGKVRRQVEEGNDPGTGFARPDGWKL KLEGVGSDHEWDKFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13990			Exostosin family protein (.1)		Lus10001028 [exp]	0	1
AT4G26540			Leucine-rich repeat receptor-l...		Lus10005848 [exp]	6.9	0.7271
AT5G56040			Leucine-rich receptor-like pro...		Lus10005847 [exp]	7.3	0.7759
					Lus10007785 [exp]	26.8	0.6265
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	30.3	0.6707
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	31.1	0.6413
AT4G35620		CYCB2;2	Cyclin B2;2 (.1)		Lus10041092 [exp]	71.6	0.5642
AT3G52470			Late embryogenesis abundant (L...		Lus10000157 [exp]	91.8	0.5528
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10009231 [exp]	109.0	0.5869
AT2G15220			Plant basic secretory protein ...		Lus10014106 [exp]	119.6	0.5886
AT4G30630			unknown protein		Lus10026889 [exp]	148.5	0.5421

Compare expression of checked genes

Lus10001028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.