Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47790 519 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003441 [exp] 441 / 2e-157 AT2G47790 317 / 2e-108 Transducin/WD40 repeat-like superfamily protein (.1) Lus10007274 [exp] 42 / 0.0008 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 42 / 0.0009 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G205600 [exp] 543 / 0 AT2G47790 534 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G130600 [exp] 517 / 0 AT2G47790 492 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001029 pacid=23171558 polypeptide=Lus10001029 locus=Lus10001029.g ID=Lus10001029.BGIv1.0 annot-version=v1.0 ATGGAAGACGCCGCTGAAATGGAAGTTGAGGAAGAACGTGCAACGTTTTCCCCTGCCAACAGCTCGGCCAAAAGATTTGGACTCAGAAACTCAATTCAGA CCAATTTCGGTGACGATTATGTTTTCCAGATTGTCCCAAAAGAAGATTGGACATCAATGGCGGTTTCGCTGTCTACAAATGCGGTGAAGCTCTACTCTCC CACGACGGGCCAGTACCTAGGAGAGTGCAGAGGCCATTCAGACACCATCAATGAGATTTCTTTCTCTGGTTCTTCATCTCCGCACGTCTTGCACTCGTGC TCTTCAGATGGTACTCTTAGAGCTTGGGATACTAGAACCTTTCAGCAGGTTTCATGTATTAATGCCAGCCCTGGTCAAGAGGTCTTCAGCTTTTCATATG GAGGTTCCGATAATAACCTTCTTGCAGCCGGCTGTAAATCCCAGGTACTCTTCTGGGATTGGAGGAATAAGAAGCAAGTTGCATGCTTGGAGGATTCTCA TATGGACGATGTCACTCAGGTCCATTTTGTCCCTGGCCACCAGCACAAGCTTCTTTCTGCTTCCATCGATGGGTTGGCGTGTGTTTTCAATACCAGTGGT GATATCAATGAGGACGATGATCTGGACTCAGTTATTAATGTGGGGACATCAATTGGCAAAGTAGGTTTCTTTGGAGACAAGTTTCAGAAACTTTGGTGCT TAACACATATCGAAAGTCTGAGTATTTGGGACTGGGAGGAAGGGAGATGCGAAACGAATCTGACAGACGCCCGCGCATTGGCCTCGGAGAGTTGGGCGTT AGACAATGTGGATTATTTTATCGATTGCCACTACCCAGGAGAAGGGGACAAGCTCTGGGTGATCGGTGGCACTAAGGCCGGTACAATTGGGTACTTCGGA GTGAACCATAGAGAAGGGAGAATCGGAAGCCCGGAGGCAATTCTCGGGGGTGGACATACGGATATTGTCAGAAGTGTATTGCCGATGATGTCAGGTACTG GACCTCATGTCAACGGAGGTGCTTTCGGATGGACTGGTGGGGAGGATGGCCGGTTGTGTTGCTGGCTTTCGGACAAGTCCAGTATGATTGATCGGTCCTG GACGTCAAGTGCTTTGGTGGTTAAACCACCCAAGAAACGGAAGAACCACAGGCATCAACCGTACTAG
AA sequence Show only first row Show all	>Lus10001029 pacid=23171558 polypeptide=Lus10001029 locus=Lus10001029.g ID=Lus10001029.BGIv1.0 annot-version=v1.0 MEDAAEMEVEEERATFSPANSSAKRFGLRNSIQTNFGDDYVFQIVPKEDWTSMAVSLSTNAVKLYSPTTGQYLGECRGHSDTINEISFSGSSSPHVLHSC SSDGTLRAWDTRTFQQVSCINASPGQEVFSFSYGGSDNNLLAAGCKSQVLFWDWRNKKQVACLEDSHMDDVTQVHFVPGHQHKLLSASIDGLACVFNTSG DINEDDDLDSVINVGTSIGKVGFFGDKFQKLWCLTHIESLSIWDWEEGRCETNLTDARALASESWALDNVDYFIDCHYPGEGDKLWVIGGTKAGTIGYFG VNHREGRIGSPEAILGGGHTDIVRSVLPMMSGTGPHVNGGAFGWTGGEDGRLCCWLSDKSSMIDRSWTSSALVVKPPKKRKNHRHQPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47790			Transducin/WD40 repeat-like su...		Lus10001029 [exp]	0	1
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	5.0	0.9575
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	5.1	0.9558
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10012833 [exp]	6.9	0.9526
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10041700 [exp]	6.9	0.9558
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002860 [exp]	9.2	0.9528
AT5G35530			Ribosomal protein S3 family pr...		Lus10030502 [exp]	9.6	0.9530
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10034549 [exp]	14.1	0.9415
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10032591 [exp]	14.1	0.9449
AT3G01790			Ribosomal protein L13 family p...		Lus10032063 [exp]	15.4	0.9352
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10015841 [exp]	15.5	0.9516

Compare expression of checked genes

Lus10001029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.