Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001031 [exp] 114 / 2e-33 ND 38 / 8e-04 Lus10003442 [exp] 112 / 1e-32 ND 37 / 0.002 Lus10003443 [exp] 102 / 8e-29 ND / Lus10019332 [exp] 93 / 5e-25 ND / Lus10006964 [exp] 67 / 1e-13 AT5G48540 38 / 0.008 receptor-like protein kinase-related family protein (.1) Lus10025477 [exp] 66 / 1e-13 ND / Lus10025476 [exp] 62 / 4e-12 AT2G31620 44 / 3e-05 Receptor-like protein kinase-related family protein (.1) Lus10009371 [exp] 55 / 2e-10 ND / Lus10012130 [exp] 54 / 6e-10 ND 39 / 4e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10001030 pacid=23171561 polypeptide=Lus10001030 locus=Lus10001030.g ID=Lus10001030.BGIv1.0 annot-version=v1.0 ATGATGTTACGATCGTTAGCAGCAGTGATGTTCCTGGTAACAATCAAGTGGCCGTCTCGGGTAAGCTCGATCCATGATCCACACTGTGTATTAAGGGACA ACCAAATTCAGTGCGCAAAAGCTCTGTTGCCGATCGATTCGCGGGCGTGTCAATATAACATATTGAGTGATTTTGAGGACGATGTCTTTAGCACCAATGA TCCTATTGGTTGTCACAATGTTCCTTTCTCGGATGCCGAGGGTGGTTCCTTCGTAGCATTCGCTTATTTCTCGTGTAACGAGTTAAGTTACAAGTGCAAG CTCTGTTTTGACGACGCCTCCCAACAACTGTGGGATTCTTGTCCCGGTAGAGCTGGAGGGACCATCTCGCTTGAGCACTGTTGTCTGAGGTATGAGACTT ATTATAGCTTCTGTCGTTCCTACTGA
AA sequence Show only first row Show all	>Lus10001030 pacid=23171561 polypeptide=Lus10001030 locus=Lus10001030.g ID=Lus10001030.BGIv1.0 annot-version=v1.0 MMLRSLAAVMFLVTIKWPSRVSSIHDPHCVLRDNQIQCAKALLPIDSRACQYNILSDFEDDVFSTNDPIGCHNVPFSDAEGGSFVAFAYFSCNELSYKCK LCFDDASQQLWDSCPGRAGGTISLEHCCLRYETYYSFCRSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001030 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Lus10041818 [exp]	8.0	0.7665
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10011244 [exp]	9.9	0.7994
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10040227 [exp]	11.2	0.7622
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10040245 [exp]	14.9	0.7856
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	16.9	0.7718
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	18.3	0.7645
AT4G05400			copper ion binding (.1.2)		Lus10031070 [exp]	20.6	0.7290
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	21.4	0.7310
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023318 [exp]	21.7	0.7516
					Lus10037930 [exp]	23.2	0.7426

Compare expression of checked genes

Lus10001030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.