Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003442 [exp] 218 / 2e-74 ND 37 / 0.002 Lus10003443 [exp] 157 / 1e-50 ND / Lus10001030 [exp] 114 / 1e-33 ND / Lus10019332 [exp] 103 / 3e-29 ND / Lus10012129 [exp] 56 / 8e-11 ND / Lus10012132 [exp] 54 / 6e-10 ND 38 / 0.001 Lus10006964 [exp] 54 / 2e-09 AT5G48540 38 / 0.008 receptor-like protein kinase-related family protein (.1) Lus10025475 [exp] 52 / 1e-08 ND / Lus10010417 [exp] 50 / 1e-08 ND 37 / 0.002
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10001031 pacid=23171564 polypeptide=Lus10001031 locus=Lus10001031.g ID=Lus10001031.BGIv1.0 annot-version=v1.0 ATGATGTTACAATCACTAACAGTAGTGTTCTTCCTGGTAGCAATCATCACGTGTTCTAGCGTGAACTCCATTGATGATCCATACTGTGATGGATTGTCCG ACGGCGAATCTAGGTGCAATTCGGACCTGTTCCCGCCGAGTGCTGAGAGCATTCAAGAGTACCTATTGGACAGGTTAAAGGAGGAAGTTTTCCAATGCAA AATACCCATCGCTTGCTACAATATTGATTCAACCAACGGCTATTTCTCTTGCAATCAGTTACGTGACGACTGCAAAACATGTTACGATGCCGCCGTGGTC AATATGAAAAATTGGTGTCCTGGTAGAGCTGGTGCAGCTACCTCGTTGGAGCATTGTTGTCTAAGGTATGAGACTGCATATCACTTTTGTCGTCCCATGT GA
AA sequence Show only first row Show all	>Lus10001031 pacid=23171564 polypeptide=Lus10001031 locus=Lus10001031.g ID=Lus10001031.BGIv1.0 annot-version=v1.0 MMLQSLTVVFFLVAIITCSSVNSIDDPYCDGLSDGESRCNSDLFPPSAESIQEYLLDRLKEEVFQCKIPIACYNIDSTNGYFSCNQLRDDCKTCYDAAVV NMKNWCPGRAGAATSLEHCCLRYETAYHFCRPM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001031 [exp]	0	1
AT5G04885			Glycosyl hydrolase family prot...		Lus10013388 [exp]	5.3	0.9296
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	8.4	0.9075
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	13.3	0.9410
					Lus10019052 [exp]	18.5	0.9345
AT1G65330	MADS	AGL37, PHE1	PHERES1, AGAMOUS-like 37, MADS...		Lus10004150 [exp]	18.6	0.9335
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10004324 [exp]	32.0	0.9215
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10037466 [exp]	32.9	0.9128
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	36.0	0.8834
AT3G57440			unknown protein		Lus10031072 [exp]	39.4	0.8843
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10026288 [exp]	39.4	0.9114

Compare expression of checked genes

Lus10001031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.