Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 42 / 5e-05 MLP423 MLP-like protein 423 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001032 [exp] 271 / 2e-94 AT1G24020 44 / 1e-05 MLP-like protein 423 (.1.2) Lus10003448 [exp] 207 / 5e-69 ND 36 / 0.005 Lus10003451 [exp] 128 / 3e-38 AT1G24020 73 / 7e-17 MLP-like protein 423 (.1.2) Lus10001042 [exp] 127 / 1e-37 AT1G24020 69 / 5e-15 MLP-like protein 423 (.1.2) Lus10001041 [exp] 120 / 7e-35 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10003450 [exp] 115 / 4e-34 ND 39 / 6e-05 Lus10000474 [exp] 117 / 9e-34 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10014241 [exp] 96 / 2e-25 AT1G24020 61 / 5e-12 MLP-like protein 423 (.1.2) Lus10001037 [exp] 94 / 1e-23 AT1G24020 68 / 7e-14 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 59 / 3e-11 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10001033 pacid=23171562 polypeptide=Lus10001033 locus=Lus10001033.g ID=Lus10001033.BGIv1.0 annot-version=v1.0 ATGAGTAACGGAACAAAGACGGTGGCGTTTCACATGCGTTCCTCAGCCAGCGATGTGTGGAATTCCATCGTCGCCGCTCCCATCGTCTTCCCTGCGGTGA TGCGTGATCTCTTTTCCAATATAGAACGTGTAATCGGTGACGGTGCAACCCAAGGCTCCATCCGGGACATCACTTTTGGTGTCACCTATAACAGGACGGC GCCGTCAGCAAGGGAGATGATAACGGAGATAGACCATGTAAAAATGACAGTGAAATCGAAATTCGCTTCTAACGAAGGCTCCCTGGTGCCGAAAGTGTTT GACAATTTCGAAACAACCATGACGGTGGAGCCCTTGTCCCGCGAGTTTCTGACAGGACCGGGCTGCACCGTCCATTGGGAATGTAGTTTCTACACTCAGG ACATCGGCACTAGAGGGAGCTTGTTCTTGGATGACCTCATGAGTGTTATGCAGACTGCCTTTCAGGATAGTTTGGACAGCTACCTTCAGAGGGCCGTCCG CCGTATGTGA
AA sequence Show only first row Show all	>Lus10001033 pacid=23171562 polypeptide=Lus10001033 locus=Lus10001033.g ID=Lus10001033.BGIv1.0 annot-version=v1.0 MSNGTKTVAFHMRSSASDVWNSIVAAPIVFPAVMRDLFSNIERVIGDGATQGSIRDITFGVTYNRTAPSAREMITEIDHVKMTVKSKFASNEGSLVPKVF DNFETTMTVEPLSREFLTGPGCTVHWECSFYTQDIGTRGSLFLDDLMSVMQTAFQDSLDSYLQRAVRRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001033 [exp]	0	1
AT2G22180			hydroxyproline-rich glycoprote...		Lus10000688 [exp]	5.4	0.8900
					Lus10000824 [exp]	7.6	0.8900
					Lus10003272 [exp]	9.3	0.8900
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10003626 [exp]	10.8	0.8900
					Lus10010826 [exp]	12.0	0.8900
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10042522 [exp]	12.6	0.7767
					Lus10011629 [exp]	13.2	0.8900
					Lus10022108 [exp]	14.2	0.8900
					Lus10026869 [exp]	14.3	0.7636
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	15.2	0.8900

Compare expression of checked genes

Lus10001033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.