Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 335 / 1e-101 disease resistance family protein / LRR family protein (.1) AT1G71400 252 / 9e-72 AtRLP12 receptor like protein 12 (.1) AT4G04220 242 / 3e-68 AtRLP46 receptor like protein 46 (.1) AT5G46330 243 / 3e-67 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G05660 234 / 6e-65 AtRLP33 receptor like protein 33 (.1) AT5G44700 235 / 2e-64 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 225 / 3e-61 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G13920 223 / 5e-61 AtRLP50 receptor like protein 50 (.1) AT1G74190 222 / 2e-60 AtRLP15 receptor like protein 15 (.1) AT1G74170 218 / 5e-59 AtRLP13 receptor like protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001035 [exp] 1165 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1043 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1012 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 993 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 971 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 937 / 0 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 901 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 850 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 839 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196766 [exp] 436 / 5e-144 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 415 / 2e-130 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 406 / 2e-126 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 393 / 1e-122 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 390 / 8e-122 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 390 / 2e-121 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 388 / 7e-121 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 384 / 7e-119 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 383 / 1e-118 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 386 / 2e-118 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10001034 pacid=23171551 polypeptide=Lus10001034 locus=Lus10001034.g ID=Lus10001034.BGIv1.0 annot-version=v1.0 ATGATAAATCTGGTCCCAAATCTATCAGAACTGTATCTATCAAATTGTCAAATCAGTGGTAGCTTTTCCTTGGTACATGTCAACTTGTCATCTTTGTCAG TTCTTGATCTCAGTTCTAATCGATTCGGCTCTGCTTCATTTCCTAGCTGGGTTTCTCATCTGAAAAGTCTGACATCGTTGAATCTCCGAGAGAACAACCT CAGTGGTCCTGTCCCCGAAGAGATTCGTAACCTTACTTCTCTCCGAGTTCTTACACTTTGTTACAACATTTTCCATGTTGGTTCCATACCAAACTGGTTG TTTGGCTTTCGTCATCTCGAAGACCTTAATATTGCCGCTAGCTTTTTGGATGGTGAAGTTCCCGACGGAATTGGGAACTTGACCTCTCTTATTAATCTCG ACTTATCATCAAATCAGCTCAAAGGGAGGATTCCAGCGTCATTCCGAAAATTTTGCAGGTTGACCTCACTGTCACTATCATATACAAAACTAAAACAAAA TGTATCAGAGATTCTTCAGATTCTTGAAGGGTGTCCTTCTAGCACGCTAGAGTCATTGTATATGAGTGGTTGTCAAGTCTTCGGTCAGTTGACCGATCGG ATTGCCATGTTCAAGAGACTAATCCATCTCGTACTCGATCACAACTACATATCTGGTCGACTTCCGATGTCATTCGGGGGATTGGCATCTTTGAGTTATG TGAACCTTGCTAGCAACCGTATTAACGGGACTATTCCAGCAAGTTTTGGCGGACTTGCAAATCTTGAAGTTGCTGACATTTCCCACAACTTAATCGAGGG CGTTGTTTCCTCCGAAATCCACTTTGCCAACCTCGCGAAATTGAAAGCCTTCCAGGCAGCTGGAAACCAAATTGTGTTCAAAGTTAAACCAGATTGGGTT CCTCCATGCAAGCAGCTTGCAGTAATGGACTTAAGTTCATGGCACGTTGGACCTGGCTTTCCCAAATGGCTCCAATTAGTTCCGTTTATTACGTCTCTCG ATCTGTCAAACACAGGAATTTCGGAACCGATTCCTGATTGGTTCTGGAGCATGAATTCTCAGTGGGACTATCTCAATTTTTCTCACAACCAAATCCCTGG ACGGCTTACAAATTTTTTCCCTGCTGAATCCTATGGCTCATTGTTTGACCTCAGCTGGAACTACTTGGAAGGTCCACTGCCAGTTACATCGTCCAAGTTG ACCGCATTGGACCTTTCCAATAATTATCTGTCTGGAAACTTGTTCAAGTTCTTGTGCTTCAATCCATCTCAAACAAGGAACACACTGTTCTTAAATCTTC AAGGCAACCTTCTGTCCGGAGACATACCAGAATGTTGGAAGACTTGGAAGCGCTTGAAGGTTATAAGACTAGGGAGCAACAATTTCGGAGGGGAAATTCC AAAATCCATTGGAACATTGAGCTCCCTACTGTCCTTGCATATTCAGAACAACTACCTGACCGGTGAGATCCCTTCGTCTCTTGGTAACTGCTCCGCTCTA GTCTCCATCGACTTGGGCGACAATGAATTGGAAGGGAACATTCCAAATTGGATTGGGGAAAGGCTATCGAGATTGGCCATAATCAATTTACACGGCAATA AGTTCAGGGGCGACATTCCTGAAGAGTTTTGCCATCTGCAGCTTCTGCAAATCTTGGACATTTCTCATAATTTTCTATCTGGGAACTTGCCAGGGTGTGT AACTAATTTCAGCGCAATGGCCGATCCGAGTAAGGAGGATAATTTAGGAGTAATTTACCTTGGCTTCCGATGGTCGGAACCGCTCGTTGAATACATGTCT CGTATCTTTCAATCAGCTGTGAACTTGCCGCGGTGTGTGGCTAAATTAGGAGTAAATTATCCTTGCTTTGGAGGGGCGGAAGCGTTCAAGGAATATCAAG TCCTTGTGGCGCAAGGAAAGGTGAAGGCTTACAGCACCATACTGAATTACGTGAGAAGTTTCGACCTTTCCTGGAATAACTTTTCAGGAGAGATTCCGAA GCAGATTACTAGCCTAGCAGCGTTGCAGTATCTTAACTTGTCTCATAACTCGTTCTCCGGTTCTATTCCAGAAAACTTGGATGCGATGGAGTCGCTTGAA TCTTTGGACATTTCTGAAAATCAACTGTCTGGTGCAATTCCATCAGGAATGGCAAGTCTGACATTCTTGAACTACTTGAACTTGTCCTACAACAACTTGA GTGGGAGAATTCCTTCAAGCACTCAACTGCAGAGCTTTGATCCATCAAGCTTCATCGGCAACAATAAGTGCCTTTGCGGCTCTCCGTTGAACGTGAGCTG CTGCATGGGAAAGAAGTTGTTGGTGCGTGGGAATCGAGATTATGGTTCGCAGTACTGGTTCTCTGTCCGCGTGATGTTTGGGTTCGTATTCGGATTCTGG GGGATAGTCGGTCCTCTAGCAGTCAGCACAGAATTGAGAAAGTTGTGCTTTGGTGTAATCGATCGCATGGCGGCAAAAGTCTTCAACTTGGTAATGCATT GTTAA
AA sequence Show only first row Show all	>Lus10001034 pacid=23171551 polypeptide=Lus10001034 locus=Lus10001034.g ID=Lus10001034.BGIv1.0 annot-version=v1.0 MINLVPNLSELYLSNCQISGSFSLVHVNLSSLSVLDLSSNRFGSASFPSWVSHLKSLTSLNLRENNLSGPVPEEIRNLTSLRVLTLCYNIFHVGSIPNWL FGFRHLEDLNIAASFLDGEVPDGIGNLTSLINLDLSSNQLKGRIPASFRKFCRLTSLSLSYTKLKQNVSEILQILEGCPSSTLESLYMSGCQVFGQLTDR IAMFKRLIHLVLDHNYISGRLPMSFGGLASLSYVNLASNRINGTIPASFGGLANLEVADISHNLIEGVVSSEIHFANLAKLKAFQAAGNQIVFKVKPDWV PPCKQLAVMDLSSWHVGPGFPKWLQLVPFITSLDLSNTGISEPIPDWFWSMNSQWDYLNFSHNQIPGRLTNFFPAESYGSLFDLSWNYLEGPLPVTSSKL TALDLSNNYLSGNLFKFLCFNPSQTRNTLFLNLQGNLLSGDIPECWKTWKRLKVIRLGSNNFGGEIPKSIGTLSSLLSLHIQNNYLTGEIPSSLGNCSAL VSIDLGDNELEGNIPNWIGERLSRLAIINLHGNKFRGDIPEEFCHLQLLQILDISHNFLSGNLPGCVTNFSAMADPSKEDNLGVIYLGFRWSEPLVEYMS RIFQSAVNLPRCVAKLGVNYPCFGGAEAFKEYQVLVAQGKVKAYSTILNYVRSFDLSWNNFSGEIPKQITSLAALQYLNLSHNSFSGSIPENLDAMESLE SLDISENQLSGAIPSGMASLTFLNYLNLSYNNLSGRIPSSTQLQSFDPSSFIGNNKCLCGSPLNVSCCMGKKLLVRGNRDYGSQYWFSVRVMFGFVFGFW GIVGPLAVSTELRKLCFGVIDRMAAKVFNLVMHC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10001034 [exp]	0	1
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10022696 [exp]	2.8	0.6625
AT1G58060			RNA helicase family protein (....		Lus10012694 [exp]	7.3	0.6233
AT1G26930			Galactose oxidase/kelch repeat...		Lus10023608 [exp]	9.5	0.6473
					Lus10040421 [exp]	9.8	0.7084
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10000678 [exp]	21.5	0.6327
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10015748 [exp]	25.8	0.5728
					Lus10017290 [exp]	26.2	0.6402
					Lus10000085 [exp]	28.4	0.5809
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10000216 [exp]	35.7	0.5501
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10002890 [exp]	36.0	0.6322

Compare expression of checked genes

Lus10001034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.