Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 374 / 1e-113 disease resistance family protein / LRR family protein (.1) AT1G71400 255 / 1e-71 AtRLP12 receptor like protein 12 (.1) AT3G11010 248 / 1e-68 AtRLP34 receptor like protein 34 (.1) AT3G05660 246 / 4e-68 AtRLP33 receptor like protein 33 (.1) AT5G44700 249 / 7e-68 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G11080 239 / 2e-65 AtRLP35 receptor like protein 35 (.1) AT4G20140 238 / 2e-64 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G27060 235 / 3e-64 AtRLP53 receptor like protein 53 (.1) AT4G04220 232 / 1e-63 AtRLP46 receptor like protein 46 (.1) AT2G15080 231 / 2e-62 AtRLP19 receptor like protein 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016340 [exp] 1393 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1309 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 1268 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 1247 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10001034 [exp] 1208 / 0 AT2G34930 360 / 1e-110 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 1184 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 1068 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 1061 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 1056 / 0 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 513 / 4e-165 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 502 / 4e-161 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 497 / 2e-159 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.003G196766 [exp] 466 / 3e-153 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 475 / 3e-151 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 469 / 6e-149 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 466 / 7e-148 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 461 / 4e-146 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 454 / 6e-142 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 447 / 8e-139 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001035 pacid=23171556 polypeptide=Lus10001035 locus=Lus10001035.g ID=Lus10001035.BGIv1.0 annot-version=v1.0 ATGACTACCGACTTCCTGGAAGTTCATTTTAATTCGTCTGCCAACGATGTTTGGGGTGCCATCACCACCGGCACAGCTCTTTACCCGAAGGCCATGCGCA ATCTCTATCACCAGATCAAGTCCATCAGGAGCGATGGTTTCAGCTCTGGCTCTATGCGTACAATCACCTTCGGCTATGTGTTCCTTCTTACTTGGTTGTG TTTCTGCTGCTATGGAACTTGCGGCGTAAGTTGCATTGAAGCTGAAAGGAAAGCCCTTTTGAGTTTTAAGGCTGACCTCCAAGACCCTTCAGGCCGGCTA TCTTCTTGGGTAAATAGCAGCAAGTATTGTTGTAAATGGTCTGGTGTTGTATGTGACAACTTCACCGGCCATGTCACTGAGCTCCGCCTCCCATGTCCTG TCGATTTTGACGAGGATTCTATGCTCAAGGGTAAGCTGAATCCTTCCTTACTTGACTTGAAGCATCTTACTTATCTGGACCTGTCGAATAATGATTTCCA AGGGATTCCTATTCCCCGGTTTCTTGGGTCAATGACAAGTTTAACTTCTCTTTTACTTGGTGGCTCTAATTTTTCGGGAGCCATTCCTCATCGTCTAGGG AATCTTTCGAATTTGCTTCAACTCGATCTCAAGGCTGGCGGAGTTGCGTACTATGGGCTATATGCTGATAGTTTGCAGTGGCTTTCTGGACTACCTACAC TAGAATACCTTGATTTGAGTGAGGTTGATCTTAGTAAGGCTTCCGATTGGCTGACCATGATAAATGTGGTCCCAAATCTATCACAATTGTATCTATCACA TTGTCAAATCAGCGGTAGCTTTCCCTTGGTACGTGTCAACCTGTCGTCTTTGTCAGTTCTTGATCTCGGTTCCAATCGATTCGGCCCGGCTGCATTTCCT AGCTGGATTTCTCATCTGAAAAGTCTGACATCATTGAATCTCCGAGACAACAACCTCATCGGTCCTGTCCCTGAAGAACTTCGTAACCTTACTTCTCTCA GAGTCCTTATACTTTGTAATAACATTTTCAATGTTGGTTCCATACCAAACTGGCTATTCGCCTTTCGTCATCTTGCGGACCTTAACATTGCCGCTAGCTA TTTGGATGGTCAAGTTCCCAATGGAATTGGGAACTTGACCTCTCTTGTTAATCTGGACTTATCATCCAATCACGATCTTCAACTTGAAGGAGGGATTCCA GCGTCATTAACAAGTTTTTGCCAGTTGACCTCACTGTCACTGTCATACATAAAACTAAAACAAAGTGTATCAGAGGTTCTTCAGATTCTTGAAGGGTGTC CTTCTAGAACGCTGGAGTTATTGTCTTTGAGTGGTTGTCAACTATTTGGCCAGTTGACTGGTCGGATTTCCAAGTTCAAGAGACTATACCATCTCAAGCT CGATCACAACTCGATATCTGGTCCACTTCCAATGTTATTTGGGGAACTGACATCTTTGAGTTATGTAAACCTTGCTAGCAACTGTATTAACGGGACCATT CCATCAAGTTTCGGGGAACTTGCAGATCTTGATGTTGCTGATATTTCCCATAACTTAATGGAGGGCATTGTTTCCTCCGAAATTCACTTCGCCAACCTCA CTAAGTTGAGTGGTTTCCATGCAGCTGGAAACCAAATTGTGTTCAAAGCTAAACCAGATTGGGTTCCTCCATGCAAGCAGCTTGCAGTACTGGACTTGAG TTCATGGTACGTTGGACCTGGCTTTCCCATATGGCTCCAATCATTCCAGTTTCTCCTGTCTCTTGATCTGTCCAACGCTGGGATTTCAGAACCAATTCCT GATTGGTTCTGGAGTATGAACTTTCAATTCTACTATCTCAACTTTTCTCACAACCAAATCCCTGGACGGCTTCCATTTTTACTTCCTGCTTACTCCTCTC TCACAATGTTTGACCTCAGCTGGAACTACTTGGAAGGTCCGCTGCCAGTTATATCGTCCAAGTTGACTGCATTGGACCTTTCCAACAATTATCTGTCTGG AAACTTGTTCAAGTTCTTGTGCTTCAATCCATCTCAGACAAGGAACACACTGTTCTTAAATCTTCAAGGCAACCTTCTGTCCGGAGACATACCGGAATGT TGGAAGACTTGGATGAGCTTGAAGGTTATAAGACTAGGCAGCAACAATTTCGAAGGGGGAATTCCGAAATCCATTGGAACATTGAGCTCCCTACTATCTT TGCGTATTCAGAACAACTACCTGACCGGTGAGATCCCTTCGTCTCTTGGTAACTGCTCCGCTCTAGTCTCCATCGACTTGGGCGACAATGAATTGGAAGG GAACATTCCGAATTGGGTTGGGGAAAGGTTATCAAGATTGGCCATCATCAATTTACATGGCAATAAGTTCAGGGGCGAAATTCCTCAGGAGCTTTGCAAT CTGCAGCTTTTGCAAATCTTGGACATTTCTCATAACTTTCTATCTGGAAACTTGCCAGGATGTGTAACTAATTTCAGCGCAATGGCCAATTCAAGTAAGG AGGATCAAAGAGCTGCAATTTACCTTTTCTCTGGAGGGGCGAAAGCGTTCGTCGAATACCAGGTCCTTGTGGCGCAAGGAAAGGTGAAGGATTACAGCAC CATACTGAATTACGTCAGAAGTTTAGACCTTTCCTGGAACAACTTTTCAGGACAGATTCCGAAGCAGATTACTAGCCTTGCGGCGTTGCACTATCTTAAC TTGTCTCATAACTCCTTTTCTGGTTCTATCCCAGAAAGCATAGATGCCATGGCGTCGCTTGAATCTTTGGACATTTCTGAAAATCAACTGTCTGGTGCAA TTCCATCAGGAATGGCAAGTTTGACATTCTTGAATTACTTGAACCTGTCCTGCAACAATCTGAGTGGGAGAATTCCCTCAGGCACTCAACTGCAGAGCTT TGATCCATCAAGCTTCATTGGTAACAATAAGGGCCTTTGCGGCTCTCCGTTGAATGTGAGCTGCTGCATTGGAAAGAAGTTGGTGCCTGCTTCTGGTGAA GGGAATGTAGATTATGATTGGCAATGGGTCTCTCTCAGCGTGGTGTTTGGGTTTTTATTCGGATTCTGGGGGATAGTCGGTCCACTAGCACTCAGCACAC AATTGAGAAACTTGTGCTCTGTTGTCCTCGATTGCGTGAGGGAAAAACTCTGCAACTTCTAG
AA sequence Show only first row Show all	>Lus10001035 pacid=23171556 polypeptide=Lus10001035 locus=Lus10001035.g ID=Lus10001035.BGIv1.0 annot-version=v1.0 MTTDFLEVHFNSSANDVWGAITTGTALYPKAMRNLYHQIKSIRSDGFSSGSMRTITFGYVFLLTWLCFCCYGTCGVSCIEAERKALLSFKADLQDPSGRL SSWVNSSKYCCKWSGVVCDNFTGHVTELRLPCPVDFDEDSMLKGKLNPSLLDLKHLTYLDLSNNDFQGIPIPRFLGSMTSLTSLLLGGSNFSGAIPHRLG NLSNLLQLDLKAGGVAYYGLYADSLQWLSGLPTLEYLDLSEVDLSKASDWLTMINVVPNLSQLYLSHCQISGSFPLVRVNLSSLSVLDLGSNRFGPAAFP SWISHLKSLTSLNLRDNNLIGPVPEELRNLTSLRVLILCNNIFNVGSIPNWLFAFRHLADLNIAASYLDGQVPNGIGNLTSLVNLDLSSNHDLQLEGGIP ASLTSFCQLTSLSLSYIKLKQSVSEVLQILEGCPSRTLELLSLSGCQLFGQLTGRISKFKRLYHLKLDHNSISGPLPMLFGELTSLSYVNLASNCINGTI PSSFGELADLDVADISHNLMEGIVSSEIHFANLTKLSGFHAAGNQIVFKAKPDWVPPCKQLAVLDLSSWYVGPGFPIWLQSFQFLLSLDLSNAGISEPIP DWFWSMNFQFYYLNFSHNQIPGRLPFLLPAYSSLTMFDLSWNYLEGPLPVISSKLTALDLSNNYLSGNLFKFLCFNPSQTRNTLFLNLQGNLLSGDIPEC WKTWMSLKVIRLGSNNFEGGIPKSIGTLSSLLSLRIQNNYLTGEIPSSLGNCSALVSIDLGDNELEGNIPNWVGERLSRLAIINLHGNKFRGEIPQELCN LQLLQILDISHNFLSGNLPGCVTNFSAMANSSKEDQRAAIYLFSGGAKAFVEYQVLVAQGKVKDYSTILNYVRSLDLSWNNFSGQIPKQITSLAALHYLN LSHNSFSGSIPESIDAMASLESLDISENQLSGAIPSGMASLTFLNYLNLSCNNLSGRIPSGTQLQSFDPSSFIGNNKGLCGSPLNVSCCIGKKLVPASGE GNVDYDWQWVSLSVVFGFLFGFWGIVGPLALSTQLRNLCSVVLDCVREKLCNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10001035 [exp]	0	1
					Lus10004778 [exp]	1.4	0.9485
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	2.4	0.9243
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10028102 [exp]	5.0	0.9201
					Lus10031873 [exp]	6.2	0.9213
					Lus10007802 [exp]	6.3	0.9203
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	6.5	0.8994
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	7.7	0.9010
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10009914 [exp]	8.1	0.8637
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	8.5	0.9081
AT2G26390			Serine protease inhibitor (SER...		Lus10005087 [exp]	8.8	0.8583

Compare expression of checked genes

Lus10001035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.