Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 115 / 2e-28 disease resistance protein (TIR-NBS-LRR class) (.1) AT3G44670 102 / 3e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G44480 97 / 2e-22 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 93 / 5e-21 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44630 88 / 4e-19 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT2G14080 87 / 7e-19 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 87 / 1e-18 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46470 85 / 3e-18 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 84 / 6e-18 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 84 / 8e-18 TAO1 target of AVRB operation1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041559 [exp] 311 / 2e-107 AT1G69550 88 / 9e-20 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10008026 [exp] 319 / 7e-104 AT5G36930 204 / 1e-54 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029628 [exp] 239 / 2e-71 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10035674 [exp] 223 / 7e-66 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 206 / 4e-60 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 202 / 1e-58 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 201 / 2e-58 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10001788 [exp] 198 / 7e-58 AT1G69550 142 / 2e-34 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10020237 [exp] 189 / 8e-56 AT1G69550 99 / 3e-21 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030318 [exp] 105 / 5e-25 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030700 [exp] 104 / 8e-25 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.018G145580 [exp] 90 / 2e-20 AT3G44480 81 / 2e-16 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.005G031899 [exp] 89 / 2e-19 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G070479 [exp] 89 / 2e-19 AT5G17680 285 / 2e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 88 / 3e-19 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 88 / 3e-19 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 88 / 4e-19 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 87 / 5e-19 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 87 / 7e-19 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10001038 pacid=23171557 polypeptide=Lus10001038 locus=Lus10001038.g ID=Lus10001038.BGIv1.0 annot-version=v1.0 ATGCCCGCTGTGGTCACAGGGCTCGAGAGTCTGAAATCGTTACAAACGCTAGAAATTAAGGCCTGCAGGTCAGTCAGGAGGCTGGCTGACGTATCGGGCC TCGAGAACCTGGAGACTCTCGATGTCAGTGGGTGCATACAGCTGGTCGAAGTGACTGGCCTCGAGAGGCTGAAATCGTTGGAGACGTTACAAATGAGGGG TTGCAAGTCAGTCAGGAGGCTGGCTGACGTATCGGGCCTCGAGAACCTGGAGACTCTCGATGTCAGTGGGTGCATACAGCTGGTCGAAGTGACTGGCCTC GAGAGGCTGAAATCGTTGGCGACGTTACAAATGAGAGGTTGCAAGTCAGTCAGGAGGCTGGCTGATGTGTCGGGCCTCAAGAATTTGGTGGAGCTCGATG TCAGCGGGTGCGTACTGTTGGTCGAGGTCACATGCCTCGGCAGACTGGGATCGTTGCAGAAGCTGAATCTGTCTGGATGTTGGTCGATTCGGGAGCTTCC AGATGTATCCGGGTTGGAGGATTTGGATGATTTGGACGTAAGTGAATGCAGAGAGTTGGTTAAGGTCACAGGTTTAGAGAATTTGGGGATGTTAAGGAAG TTGAACATGTTAGGTTGCAAATCTTTGAAGGAGTTGCCAGACATGTCTGGTCTGAAGAACCTGTGGGATTTGAATCTGAAGGGATGCTCACAGCTGAAGA CAGTGAAAGGGCTCGAGGGATTGGAATATCTAGGCATTGTGGAAATGGAGAATTGGTTAAAAGCTAAGTTTTGCTTGAAATTTGCTGCATCGAGTGTGAG ACACTTGCCACGAACGGTTCGTAGGGTCCGGGAGTATCGGAAGGATGTGAAAGAGATGAAAAGAATTCTGGGATTGCAATAA
AA sequence Show only first row Show all	>Lus10001038 pacid=23171557 polypeptide=Lus10001038 locus=Lus10001038.g ID=Lus10001038.BGIv1.0 annot-version=v1.0 MPAVVTGLESLKSLQTLEIKACRSVRRLADVSGLENLETLDVSGCIQLVEVTGLERLKSLETLQMRGCKSVRRLADVSGLENLETLDVSGCIQLVEVTGL ERLKSLATLQMRGCKSVRRLADVSGLKNLVELDVSGCVLLVEVTCLGRLGSLQKLNLSGCWSIRELPDVSGLEDLDDLDVSECRELVKVTGLENLGMLRK LNMLGCKSLKELPDMSGLKNLWDLNLKGCSQLKTVKGLEGLEYLGIVEMENWLKAKFCLKFAASSVRHLPRTVRRVREYRKDVKEMKRILGLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10001038 [exp]	0	1
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10012555 [exp]	2.0	0.9484
AT3G50150			Plant protein of unknown funct...		Lus10039369 [exp]	4.9	0.9423
AT5G01950			Leucine-rich repeat protein ki...		Lus10003244 [exp]	9.5	0.9354
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	10.1	0.9456
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	11.4	0.9184
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	12.5	0.9363
AT2G30105			unknown protein		Lus10031291 [exp]	12.5	0.9232
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10014127 [exp]	12.8	0.8961
					Lus10030943 [exp]	21.5	0.9258
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10027373 [exp]	23.5	0.9120

Compare expression of checked genes

Lus10001038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.