Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 68 / 6e-15 MLP423 MLP-like protein 423 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000474 [exp] 311 / 1e-110 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10001041 [exp] 308 / 2e-109 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10003451 [exp] 238 / 1e-81 AT1G24020 73 / 7e-17 MLP-like protein 423 (.1.2) Lus10001037 [exp] 198 / 9e-64 AT1G24020 68 / 7e-14 MLP-like protein 423 (.1.2) Lus10014241 [exp] 187 / 2e-61 AT1G24020 61 / 5e-12 MLP-like protein 423 (.1.2) Lus10001036 [exp] 191 / 2e-59 AT1G24020 68 / 2e-13 MLP-like protein 423 (.1.2) Lus10001033 [exp] 127 / 1e-37 AT1G24020 42 / 6e-05 MLP-like protein 423 (.1.2) Lus10029185 [exp] 121 / 3e-35 AT1G24020 80 / 2e-19 MLP-like protein 423 (.1.2) Lus10001032 [exp] 120 / 6e-35 AT1G24020 44 / 1e-05 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 55 / 6e-10 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10001042 pacid=23171559 polypeptide=Lus10001042 locus=Lus10001042.g ID=Lus10001042.BGIv1.0 annot-version=v1.0 ATGCCTACCGACTCCATGGAAGTTCATTTGAATTCGTCTGCTAATGATGTTTGGGGTGCCCTCACCGCCGCTACAACTGTTTTCCCTAGGGCCATGCGGG GTCTCTATCAACAAATTCGAAGTGTTGACGGTGATGGCTACACTCCTGGTTCTATGCGCACCATCACTTTCGGTCATCTTTTCGATCGTGTTGCCGGGAC AGCCACTGAGAAGATCCAAAACGTTGACCACGAAAAGTTAACTATCGAGTCAACCTTTACTGAGGATGGGGGCTTCATTCCCAACTTATTTGACACATTT GATGTCAAATTAACTGTTGTGAAATCTGCCCGCAACATGAGGGATGCTGGCTGCATGATTAAGTGGGAGTTCACTTACGATGGAGCGAATGGTAATGCTA GCCTTAGCAACCTCAAAAATGTTATGAGTCAAGCTTTCAAAGATTTGGATACCTACCTAAGGAATCATCGTGGCGTCCGCCGCCCATGA
AA sequence Show only first row Show all	>Lus10001042 pacid=23171559 polypeptide=Lus10001042 locus=Lus10001042.g ID=Lus10001042.BGIv1.0 annot-version=v1.0 MPTDSMEVHLNSSANDVWGALTAATTVFPRAMRGLYQQIRSVDGDGYTPGSMRTITFGHLFDRVAGTATEKIQNVDHEKLTIESTFTEDGGFIPNLFDTF DVKLTVVKSARNMRDAGCMIKWEFTYDGANGNASLSNLKNVMSQAFKDLDTYLRNHRGVRRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001042 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001032 [exp]	1.0	0.9536
					Lus10003448 [exp]	2.4	0.8675
					Lus10030647 [exp]	3.7	0.7743
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001041 [exp]	7.1	0.8915
AT2G48020			Major facilitator superfamily ...		Lus10042676 [exp]	9.4	0.7222
AT3G07600			Heavy metal transport/detoxifi...		Lus10016060 [exp]	9.8	0.8641
AT1G17800		AtENODL22	early nodulin-like protein 22 ...		Lus10020984 [exp]	10.2	0.8458
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	11.0	0.7194
					Lus10003443 [exp]	13.0	0.8027
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10036458 [exp]	14.6	0.6492

Compare expression of checked genes

Lus10001042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.