Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43020 439 / 2e-154 ATPAO2 polyamine oxidase 2 (.1) AT3G59050 425 / 6e-149 ATPAO3 polyamine oxidase 3 (.1) AT1G65840 338 / 1e-114 ATPAO4 polyamine oxidase 4 (.1) AT4G16310 145 / 4e-39 LDL3 LSD1-like 3 (.1) AT3G13682 131 / 1e-34 LDL2 LSD1-like2 (.1) AT3G10390 127 / 3e-33 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT1G62830 127 / 6e-33 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT5G13700 94 / 1e-21 ATPAO1, APAO polyamine oxidase 1 (.1) AT4G29720 71 / 7e-14 ATPAO5 polyamine oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029804 [exp] 468 / 6e-166 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1) Lus10020726 [exp] 465 / 9e-165 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10005021 [exp] 460 / 7e-163 AT2G43020 720 / 0.0 polyamine oxidase 2 (.1) Lus10024311 [exp] 158 / 1e-43 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10033928 [exp] 157 / 2e-43 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10017464 [exp] 123 / 1e-31 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10015996 [exp] 123 / 1e-31 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10028817 [exp] 122 / 2e-31 AT3G10390 808 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10038587 [exp] 120 / 1e-30 AT3G13682 971 / 0.0 LSD1-like2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055300 [exp] 444 / 2e-156 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.005G207300 [exp] 440 / 7e-155 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.004G075800 [exp] 336 / 7e-114 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.017G144001 [exp] 331 / 6e-112 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.005G235400 [exp] 155 / 6e-43 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G027100 [exp] 154 / 2e-42 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.010G227200 [exp] 123 / 9e-32 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.008G035200 [exp] 123 / 1e-31 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.011G127600 [exp] 123 / 1e-31 AT3G13682 959 / 0.0 LSD1-like2 (.1) Potri.002G013100 [exp] 120 / 9e-31 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10001044 pacid=23178118 polypeptide=Lus10001044 locus=Lus10001044.g ID=Lus10001044.BGIv1.0 annot-version=v1.0 ATGATGTTTCTTCAGTGGTACCTTTGCCGGATGGAGGGTTGGTTTTCTGCAGACGCCAACACCATTTCACTTCAGTGCTGGGATAAAGAAGTACTGCTTC CAGGTGGACATGGACTTATGGTCAGATGTTATGTATCAGTAATAAACACTCTCGCCAAGGGACTTGATATCCGTTTAGGGCATAGGGTACAAAGTATCAT AAGACGTCATAATGGTGTGAAGGTAACAACGGAAAACGGGAGGACATTTAAAGCAGATGCTGTCGTCGTTGCTGTGCCTCTCGGAGTGCTGAAATCGAAG ACAATTACCTTCGATCCTAAATTACCACCCTCGAAGGAGGAAGCCATTGACGGAATTGGAGTTGGAATCGAGAACAAGATTGCTCTACACTTCCACAATG TGTTCTGGCCGAATGTGGAGTTCCTAGGAGTTGTGGCGGACACTTCTTATGGGTGCACCTACTTCCTAAATCTTCACAAGGCTACTGGTCACCCTGTTCT TGTGTACATGCCAGCTGGACAGCTCGCTAGAGATGTCCAGAAAATGTTCGATGAAGCTGCTGCTAGTTTCGCTTTCTTGCAACTCAAGAGGATCCTTCCC AATGCATCAGCTCCGATTCAGCATATGGTATCTCACTGGGGAACAGACATCAACTCCCTTGGTTCCTACAGCTATGATTTTGTGGGGAAAACACATGAGC TGTATGAAAGGCTAAGAGTCCCAGTTGATAACATGTTCTTTGCTGGTAAGGCAACAAGCATGGACTTCCCGGGATCGGTCCACGGTGCATAG
AA sequence Show only first row Show all	>Lus10001044 pacid=23178118 polypeptide=Lus10001044 locus=Lus10001044.g ID=Lus10001044.BGIv1.0 annot-version=v1.0 MMFLQWYLCRMEGWFSADANTISLQCWDKEVLLPGGHGLMVRCYVSVINTLAKGLDIRLGHRVQSIIRRHNGVKVTTENGRTFKADAVVVAVPLGVLKSK TITFDPKLPPSKEEAIDGIGVGIENKIALHFHNVFWPNVEFLGVVADTSYGCTYFLNLHKATGHPVLVYMPAGQLARDVQKMFDEAAASFAFLQLKRILP NASAPIQHMVSHWGTDINSLGSYSYDFVGKTHELYERLRVPVDNMFFAGKATSMDFPGSVHGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10001044 [exp]	0	1
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	1.0	0.8588
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10025971 [exp]	6.2	0.8476
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10003208 [exp]	10.0	0.8145
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	11.6	0.7741
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	12.2	0.8169
AT3G12620			Protein phosphatase 2C family ...		Lus10023470 [exp]	15.2	0.7799
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10038228 [exp]	19.4	0.7724
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	21.1	0.7957
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10043300 [exp]	22.0	0.7613
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025133 [exp]	22.0	0.7825

Compare expression of checked genes

Lus10001044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.