Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08560 675 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 439 / 8e-149 transducin family protein / WD-40 repeat family protein (.1) AT4G02730 134 / 5e-35 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 122 / 9e-31 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 107 / 2e-25 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 91 / 5e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 79 / 4e-15 TAF5 TBP-associated factor 5 (.1) AT1G71840 73 / 1e-13 transducin family protein / WD-40 repeat family protein (.1) AT2G41500 73 / 2e-13 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G10580 73 / 2e-13 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001410 [exp] 1085 / 0 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001046 [exp] 884 / 0 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001411 [exp] 834 / 0 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10011916 [exp] 345 / 8e-113 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10022847 [exp] 340 / 7e-111 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10001412 [exp] 233 / 6e-73 AT5G08560 176 / 1e-51 transducin family protein / WD-40 repeat family protein (.1.2) Lus10014674 [exp] 131 / 7e-34 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 129 / 4e-33 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 124 / 4e-31 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206600 [exp] 797 / 0 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G055800 [exp] 783 / 0 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G002700 [exp] 546 / 0 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G254300 [exp] 468 / 2e-160 AT5G08560 502 / 6e-174 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G194100 [exp] 442 / 2e-150 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 134 / 9e-35 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 122 / 6e-31 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 111 / 6e-27 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 109 / 6e-26 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 91 / 8e-20 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001045 pacid=23178126 polypeptide=Lus10001045 locus=Lus10001045.g ID=Lus10001045.BGIv1.0 annot-version=v1.0 ATGGGAGGTTTAGAGGATGATGAACCAGCCACAAAACGTATGAAATTAGCCTGTGCAGAATCTAAAGGTCATTCAAAGGGTCACTTGCTGTCGGAGCCAA CTGTTGGGTCTTCAATAGATTTGATGGCCCGCCCTTTACAATCTGAAGAGGATGATGAGGTCATTGGTTCAAAAGGAGTCATTAAAAAGACCGAATTTGT CCAGCTAATGATGAAGGCCTTGTATTCTCTTGGATACAAGAAGACCAGTGCCTGTCTAGAAGAAGAGTCAGGCATACCCTTGCAGTCCCCCATGGTGAAG TTGTTAATACAGCAAGTTCTTGATGGCAATTGGGGTGAAAGCATTCCCACATTGCATAACATTGGGTTAACTGATGAACACATTATTAAATCAGCCTCTC TTCTGATATTGGAGCAGAAGTATTTTGAATTTGTGGATGGGAATAGAGTCCCGGAAGCTCTGGAAACTTTGAGGAAAGAGATTACTCCTTTAGGTGCTAG TAATAGTCGGCTTCGTGAGCTGTCCTCAAGCCTCTTGTCCGATCAGGCTATTTTGAGTGCTAAGACCCGGACAAAGCTGCTGCAGGAATTGCAAGAACTT TTCCCCCCAACTGTTATGGTACCAGAAAGGAGGTTAGAGCAGTTAGTTGAGCGGGCTCTCATCTTGCAGCGAGATGCCTGCATCTTTCACAACTCATTGG ATAGAGAAATGTCCCTGTATAGAGATCATCAATGTGGAAAAGATCAGATTCCGTCTCAAACTCTACAGATTTTAAAAGAACACACTGATGAAGTATGGTT CTTACAGTTTTCTCACAATGGGCAGTATTTAGCTTCCTCTTCTAACGATAAATCAGCCATCATATGGGAGGTTGGCACAAATGGTCAACTTTCTATGAGG CATAGACTATCTGGCCACCAGAAACCTGTATCCTCAGTTTCATGGAGTTGTGATGATTGTAAGATCCTCACTTGTGGCGTTGAGGAGGCTGTCAGATGCT GGGATGTTTCAACTGGTGAATGCCTCCATGTTTACGAGAAACCGGGGCTTGGCCTAGTATCCTGTGGATGGTCTCCTGACGGGAAATTGATACACACTGG AGTCAACGACAAGAGCATATGCATGTGGGAACTAGACGGGAAGGAGATCGAGTGTTGGAAAGCTCCAAAAACTACGAAGATTTCAGATTTGGAAATCAGT AGCGACGGGAAGCAGATGATGACTAGATGCAGGGAAAATGCGATTCTCTTACTCGATAAGGAAGCAAAGACTGAGAGAATGATCCAGGAGGACCAATCAA TAACCTCATTCACATTATCAAGAGACAACAGATACGTGCTGGTTAACCTCTTGGACCAGGAAATCCATCTGTGGAACATACATGGTGATATCAAGCTGCT CGCGAAGTACAAAGGTCATAAACGTACCCGTTTCATCATCAGGTCGTGTTTTGGAGGATCTGAACAATCCTTCATTGCCAGTGGTAGCGAGGACTCTCTG GTATACATATGGCTTCGAGGATCAAAGGAGCTGATAGGGACATTACCGGGGCATACAGGAGCTGTTAATTGTGTAAGCTGGAACCCTACAAACCCACACA TGTTCGCCTCAGGTAGTGACGATTGCACGATTCGAGTGTGGGGCTTGAACAACAGTGGGAAGCGACAACAGTTGGAGGAGGAAGAGGTCCACATGAATGG CACCATAGCTAGCAGCAATGGGGGAAGTTAA
AA sequence Show only first row Show all	>Lus10001045 pacid=23178126 polypeptide=Lus10001045 locus=Lus10001045.g ID=Lus10001045.BGIv1.0 annot-version=v1.0 MGGLEDDEPATKRMKLACAESKGHSKGHLLSEPTVGSSIDLMARPLQSEEDDEVIGSKGVIKKTEFVQLMMKALYSLGYKKTSACLEEESGIPLQSPMVK LLIQQVLDGNWGESIPTLHNIGLTDEHIIKSASLLILEQKYFEFVDGNRVPEALETLRKEITPLGASNSRLRELSSSLLSDQAILSAKTRTKLLQELQEL FPPTVMVPERRLEQLVERALILQRDACIFHNSLDREMSLYRDHQCGKDQIPSQTLQILKEHTDEVWFLQFSHNGQYLASSSNDKSAIIWEVGTNGQLSMR HRLSGHQKPVSSVSWSCDDCKILTCGVEEAVRCWDVSTGECLHVYEKPGLGLVSCGWSPDGKLIHTGVNDKSICMWELDGKEIECWKAPKTTKISDLEIS SDGKQMMTRCRENAILLLDKEAKTERMIQEDQSITSFTLSRDNRYVLVNLLDQEIHLWNIHGDIKLLAKYKGHKRTRFIIRSCFGGSEQSFIASGSEDSL VYIWLRGSKELIGTLPGHTGAVNCVSWNPTNPHMFASGSDDCTIRVWGLNNSGKRQQLEEEEVHMNGTIASSNGGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08560			transducin family protein / WD...		Lus10001045 [exp]	0	1
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10016651 [exp]	2.4	0.9558
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014187 [exp]	3.0	0.9573
AT3G52220			unknown protein		Lus10038762 [exp]	4.5	0.9535
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	4.7	0.9563
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10027242 [exp]	4.9	0.9506
AT1G49590			C2H2 and C2HC zinc fingers sup...		Lus10027913 [exp]	11.7	0.9270
AT3G07580			unknown protein		Lus10016076 [exp]	15.3	0.9457
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	16.3	0.9507
AT3G11210			SGNH hydrolase-type esterase s...		Lus10035506 [exp]	18.2	0.9134
AT4G14385			unknown protein		Lus10003559 [exp]	18.7	0.9205

Compare expression of checked genes

Lus10001045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.