Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08560 714 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 450 / 5e-153 transducin family protein / WD-40 repeat family protein (.1) AT4G02730 134 / 7e-35 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 123 / 5e-31 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 108 / 7e-26 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 99 / 1e-22 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 82 / 2e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 80 / 2e-15 TAF5 TBP-associated factor 5 (.1) AT4G03020 79 / 3e-15 transducin family protein / WD-40 repeat family protein (.1.2) AT5G54520 78 / 4e-15 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001411 [exp] 1089 / 0 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001045 [exp] 887 / 0 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001410 [exp] 876 / 0 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10011916 [exp] 372 / 2e-123 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10022847 [exp] 369 / 5e-122 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10001412 [exp] 324 / 5e-108 AT5G08560 176 / 1e-51 transducin family protein / WD-40 repeat family protein (.1.2) Lus10014674 [exp] 131 / 7e-34 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 130 / 2e-33 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 129 / 4e-33 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055800 [exp] 847 / 0 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G206600 [exp] 832 / 0 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G002700 [exp] 577 / 0 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G254300 [exp] 493 / 3e-170 AT5G08560 502 / 6e-174 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G194100 [exp] 451 / 1e-153 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 135 / 3e-35 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 131 / 7e-34 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 115 / 4e-28 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 106 / 6e-25 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 102 / 5e-24 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001046 pacid=23178117 polypeptide=Lus10001046 locus=Lus10001046.g ID=Lus10001046.BGIv1.0 annot-version=v1.0 ATGGGAGGTTTAGAGGATGATGAACCAGCCTCAAAGCGTTTGAAATTAGCCGGCGGTAGAGAAAAATCTAAAGGTCATTCAAACGGTGTCTTGCTATCGG AGGCTATTGTTGGGTCCTCAATAGATTTGATGGCCCGCCCTCTGCAATCCGAAGAGGATGAAGAGGTTATAGGTTCTAAAGGATTCATTCGGAAAGTTGA ATTTGTCCAGATAATAATGAAGGCATTGTGTTCTCTTGGATACAAGAAGACCAGTGCTCTTCTTGAAGAAGAGTCAGGCATACCCTTACATTCCTCGAGG GTGAATTTGTTTATGCAGCAAGTTGTTGATGGCAATTGGGGTGATAGCATTCTGACGTTACACAACATTGGGTTAAAGGATGACGACATTTTTAAGTCGG CCTCTTTTCTGATATTGGAGCAGAAGTTTTATGAGCTTTTGGATGGGGAAAATATAGCAGAAGCTGTTAAAACTTTGAGGTCTGAGATTGCTCCTCTGTG TCCTAGTAGCAATCAGGTTCGTGAGCTTTCTTTGAGCCTTGTGTCTCGTCCGAAGAGTGTTTCAGCGGGGTCGTCTAATCGGGTTAATCTGAGGGCGAAG TCTCGGACAAAGCTGCTGCAGGAATTGCAAGAACTTTTTTCCCCAACTGTTATGGTACCAGAAAGAAGGTTAGAACAATTAGTTGACCAGGCCCTGATCT TGCAGCGAGATGCCTGCATCTTCCATAACTCATCGGATAGAGATATGTCATTATACACAGACCATCGATGTGGAAAAGAGCAGATTCCTTCTCGAACATT ACAGATACTAGAAGCACACTGCGATGAAGTATGGTTCTTGAAATTTTCCCATAATGGGAAGTATTTAGCTTCCTCCTCTAATGATCGGTCAGCCATCATA TGGGAGGTTGGTCCAAGCGGTGAACTTTCTATAAGGCATAGACTATCTGGCCACCAGAAACCCGTATCCTCTGTTTCATGGAGTTGTGATGATCGTAAGA TCCTCACTTGTGGCGTTGAAGAGGCTGTCAGATGCTGGGATGTTTCAACTGGTGAATGCCTCCATGTTTATGAGAAACCGGGGCTTGGCTTAGTATCCTG TGGATGGTCTCCCGACGGAAAATTGATACTCGCTGGAGTCAATGACAAGAGCATATGCATTTGGGAACTAGATGGGAAGGAGATAGAGTGTTGGAAGGGT CAACGAACTCTCAAGATTTCCGATTTGGAAATAACTGGGGACGGGAAGCAGATAATATCTATATGCAGGGACAATGTGATTATCTTACTTGATAAGGAAG CAAAGACTGAGAGAATGATCCAGGAGGACCAAACAATAACTTCGTTCTCATTATCAAGAGATAACAGATACTTGTTGGTCAACCTCTCGGACCAGGAAAT CCACTTGTGGAACATAAACTGGGATATCAAGCTCGTGGCAAAGTACAGAGGTCATAAGCGTACCCGTTTCGTCATCAGATCTTGCTTTGGAGGATCTGAC CAAGCTTTTATTGCCAGTGGCAGCGAGGACTCACAGGTATACATATGGCATAGAGGATCAGGAGAGCTGATAGAGGCATTGTCAGGGCATTCAGGGTCCG TAAATTGCGTAAGCTGGAATCCTACTAATCCACATATGTTGGCTTCAGCGAGTGATGATGGAACGATTCGGGTCTGGGGCTTGAATAGTCATCTGCAGCA GCAGGTTCACAGAAATGGCATTGCAGCTAATTGCAATGGGAAAGCTTGA
AA sequence Show only first row Show all	>Lus10001046 pacid=23178117 polypeptide=Lus10001046 locus=Lus10001046.g ID=Lus10001046.BGIv1.0 annot-version=v1.0 MGGLEDDEPASKRLKLAGGREKSKGHSNGVLLSEAIVGSSIDLMARPLQSEEDEEVIGSKGFIRKVEFVQIIMKALCSLGYKKTSALLEEESGIPLHSSR VNLFMQQVVDGNWGDSILTLHNIGLKDDDIFKSASFLILEQKFYELLDGENIAEAVKTLRSEIAPLCPSSNQVRELSLSLVSRPKSVSAGSSNRVNLRAK SRTKLLQELQELFSPTVMVPERRLEQLVDQALILQRDACIFHNSSDRDMSLYTDHRCGKEQIPSRTLQILEAHCDEVWFLKFSHNGKYLASSSNDRSAII WEVGPSGELSIRHRLSGHQKPVSSVSWSCDDRKILTCGVEEAVRCWDVSTGECLHVYEKPGLGLVSCGWSPDGKLILAGVNDKSICIWELDGKEIECWKG QRTLKISDLEITGDGKQIISICRDNVIILLDKEAKTERMIQEDQTITSFSLSRDNRYLLVNLSDQEIHLWNINWDIKLVAKYRGHKRTRFVIRSCFGGSD QAFIASGSEDSQVYIWHRGSGELIEALSGHSGSVNCVSWNPTNPHMLASASDDGTIRVWGLNSHLQQQVHRNGIAANCNGKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08560			transducin family protein / WD...		Lus10001046 [exp]	0	1
AT5G08560			transducin family protein / WD...		Lus10001411 [exp]	1.4	0.9534
AT2G39920			HAD superfamily, subfamily III...		Lus10028259 [exp]	1.7	0.9550
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10014763 [exp]	5.7	0.9457
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10016974 [exp]	5.7	0.9517
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	8.0	0.9478
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10010465 [exp]	8.1	0.9427
AT5G11680			unknown protein		Lus10020200 [exp]	8.9	0.9458
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10033999 [exp]	9.5	0.9339
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10026287 [exp]	10.7	0.9157
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	11.7	0.9413

Compare expression of checked genes

Lus10001046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.