Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45890 616 / 0 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT1G13770 169 / 3e-46 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT2G31190 149 / 4e-39 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT5G49820 144 / 6e-37 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT5G01510 132 / 1e-32 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) AT2G23470 97 / 5e-21 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001413 [exp] 1076 / 0 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 162 / 3e-43 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10038136 [exp] 160 / 2e-42 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10036909 [exp] 144 / 4e-37 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10003558 [exp] 135 / 3e-34 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10033888 [exp] 125 / 5e-31 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10037076 [exp] 121 / 4e-29 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10016778 [exp] 112 / 6e-26 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10022474 [exp] 110 / 2e-25 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G193300 [exp] 674 / 0 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.004G229500 [exp] 155 / 1e-40 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.008G095700 [exp] 153 / 1e-40 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.005G224000 [exp] 145 / 7e-38 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.002G038600 [exp] 103 / 1e-24 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.007G035300 [exp] 107 / 2e-24 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.006G099700 [exp] 97 / 3e-21 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Potri.003G033450 [exp] 77 / 1e-15 AT3G45890 91 / 6e-21 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [flax] [poplar] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Lus10001047 pacid=23178115 polypeptide=Lus10001047 locus=Lus10001047.g ID=Lus10001047.BGIv1.0 annot-version=v1.0 ATGGTGAACCTGGCTTGCAGCAACAGTTGCAGCAGACCACTGTATCTCTCCAGAACTTGGGTTTCAACGTCTCCTACTTCTCCTCCTTCTTCAAATGTGC TAACCAACTACACTCTTCCCTTCTCACAATATCTGCGGCTAAGCTCCACTTGTTCACATTTTCACCTCAAACCTTGTGCTACATCAGTAGCGGCAGAAGC ACAGACCACTGGAGGAGGCGGCTGGGAAGGTGGGAACAACAACAATAACAATGATGATAACTCATTTGATCCATGGTGGAGGAATGGTGACAATGACCCT TCAAATTTCTCCAACGTTCCTTCCCTCTTGTTCCTGTTCTGTTGCTGCACAGTTGCCTTGTCGTTGCTCCATTTACAATTGGCCTCTTCGGCACTTGCCC GGACGACAACTGCTGCTTCCAATGATGACGACATTACTTCTCCTCCTAAGAGTGTCTGGGAAGTTCAAGGAGGAAGGTGGATCGGCCTCATTCCCGATTT CATCAAGGATGAATTCTTCATCGCTCCATCGTCTTCGGACCAGCGATACAGCATCGGGAATTTATGGCGGCACTGCAAGTCCCTTGTCATGCGTCTGATG CTTCCCGAGGGGTTTCCTCACAGCGTTACTTCCGACTACTTGGATTACTCCCTTTGGCGAGGCGTCCAAGGTGTCGCTAGTCAGGTTAGCGGAGTCCTTG CTACGCAGGCATTGCTCTATGCTATTGGATTGGGGAAAGGAGCCATCCCAACTGCTGCTGCCATTAATTGGGTGCTGAAGGATGGAATCGGGTATCTCAG CAAAATCATGCTGTCCAAGTTTGGGCGACATTTTGATGTTAACCCCAAAGGCTGGAGGCTCTTCGCTGATCTTTTGGAAAATGCTGCTTTTGGTTTAGAG ATGCTGACTCCTGCTTTTCCTCATCTATTTGTTTTCATTGGTGCTGTTGCTGGAGCTGGACGCTCTGCTGCCTCTCTTATCCAGGCATCCACTAGGAGTT GTTTCTATGCTGGTTTTGCTGCTCAAAGGAACTTTGCTGAGGTAATTGCAAAAGGTGAAGCTCAAGGAATGATCAGCAAATTTATTGGTATAATGATCGG CATAGCATTGGCCAATTACATAGGCTCTTCGACGCCCCTCGCTCTTGCTACATTTAGCGTGGTCACTGTCATCCATATGTACTGCAATTTCAAGTCTTCT CAATCCATCCAGCTAAGGACATTAAATCCCTACCGAGCAAGCCTTGTGTTTAGCGAGTATCTTCTAAGTGGTCAAGCACCTCCAATCAAAGATGTTAATG ACGAGGAACCAGTTTTCTCAGCTATACCATTTCTCAATACGAACTCTAAAGACAGAGCGCCAGCAGATGTTCTATCTTCAGAAGCGAAGCATGCTGCCGG TGATATAGAAAGACGGCTACAGTTAGGTTCCAAGCTAAGTGACGTCGTTTACAACAAGGACGATGCACTTGCGCTCTTCAGTCTATATCAAGATGAGGGT TACATTCTGGCTGAACATGGGGGGAGATTCTGCGTGGTGCTTAAAGAAAGTTGCTCACCACAAGACATGCTAAAGTCGGTATTTCAAGCGAGTTATCTGT ATTGGCTGGAGAGAAATGCAGGGATGGAAGCAAGGAACATCCCTGCCGACTGCAGAGAAGGAGGGAAGCTATGGCTATCCCTCGAGTACGCTCAGTGGGA ATTCGACCATGCAAGGAACGACAGCGTTTCAATGGGTTGGTCTGCTGATGGGCTCATAGCAAGGCCCTTGCCTAACAGAATACGTCTTGTAAATGCTGGC ACTGCTACAAAAGGCAATTGA
AA sequence Show only first row Show all	>Lus10001047 pacid=23178115 polypeptide=Lus10001047 locus=Lus10001047.g ID=Lus10001047.BGIv1.0 annot-version=v1.0 MVNLACSNSCSRPLYLSRTWVSTSPTSPPSSNVLTNYTLPFSQYLRLSSTCSHFHLKPCATSVAAEAQTTGGGGWEGGNNNNNNDDNSFDPWWRNGDNDP SNFSNVPSLLFLFCCCTVALSLLHLQLASSALARTTTAASNDDDITSPPKSVWEVQGGRWIGLIPDFIKDEFFIAPSSSDQRYSIGNLWRHCKSLVMRLM LPEGFPHSVTSDYLDYSLWRGVQGVASQVSGVLATQALLYAIGLGKGAIPTAAAINWVLKDGIGYLSKIMLSKFGRHFDVNPKGWRLFADLLENAAFGLE MLTPAFPHLFVFIGAVAGAGRSAASLIQASTRSCFYAGFAAQRNFAEVIAKGEAQGMISKFIGIMIGIALANYIGSSTPLALATFSVVTVIHMYCNFKSS QSIQLRTLNPYRASLVFSEYLLSGQAPPIKDVNDEEPVFSAIPFLNTNSKDRAPADVLSSEAKHAAGDIERRLQLGSKLSDVVYNKDDALALFSLYQDEG YILAEHGGRFCVVLKESCSPQDMLKSVFQASYLYWLERNAGMEARNIPADCREGGKLWLSLEYAQWEFDHARNDSVSMGWSADGLIARPLPNRIRLVNAG TATKGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Lus10001047 [exp]	0	1
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	4.8	0.8138
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10028572 [exp]	4.9	0.8088
AT1G13120		EMB1745	embryo defective 1745 (.1)		Lus10006979 [exp]	5.5	0.7912
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10033967 [exp]	11.7	0.7891
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10031508 [exp]	15.3	0.7436
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	17.1	0.7979
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	19.9	0.7740
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	23.5	0.7883
AT3G13226			regulatory protein RecX family...		Lus10032955 [exp]	24.0	0.7599
AT3G28760			unknown protein		Lus10005250 [exp]	24.0	0.7871

Compare expression of checked genes

Lus10001047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.