Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19150 224 / 2e-73 Ankyrin repeat family protein (.1.2) AT2G03430 78 / 4e-17 Ankyrin repeat family protein (.1) AT5G12320 71 / 4e-15 ankyrin repeat family protein (.1) AT3G24530 72 / 2e-14 AAA-type ATPase family protein / ankyrin repeat family protein (.1) AT3G09890 64 / 5e-12 Ankyrin repeat family protein (.1.2) AT5G66055 61 / 2e-10 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT5G40160 59 / 5e-10 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT4G27780 59 / 9e-10 ACBP2 acyl-CoA binding protein 2 (.1) AT2G31820 58 / 2e-09 Ankyrin repeat family protein (.1) AT5G61230 54 / 6e-09 PIA2, ANK6 phytochrome interacting ankyrin-repeat protein 2, ankyrin repeat protein 6, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001414 [exp] 395 / 1e-140 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10023642 [exp] 69 / 5e-13 AT3G24530 773 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10034913 [exp] 68 / 7e-13 AT3G24530 748 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10011097 [exp] 64 / 2e-12 AT3G24530 252 / 2e-82 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10021508 [exp] 62 / 2e-11 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2) Lus10043218 [exp] 63 / 4e-11 AT3G24530 743 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10036033 [exp] 59 / 1e-10 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10008329 [exp] 61 / 4e-10 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10002621 [exp] 60 / 4e-10 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103400 [exp] 246 / 8e-82 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.001G130500 [exp] 244 / 3e-81 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.010G161300 [exp] 71 / 2e-14 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.018G081000 [exp] 68 / 6e-13 AT3G24530 754 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.017G006800 [exp] 66 / 5e-12 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.006G158600 [exp] 65 / 6e-12 AT3G24530 741 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.012G017700 [exp] 63 / 3e-11 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1) Potri.010G185200 [exp] 63 / 4e-11 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.009G070700 [exp] 60 / 5e-11 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.015G010200 [exp] 61 / 2e-10 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10001048 pacid=23178124 polypeptide=Lus10001048 locus=Lus10001048.g ID=Lus10001048.BGIv1.0 annot-version=v1.0 ATGACTGGTGGCGGGAAAGGAGACATTCATGCGGCGGCGAGGTCCGGCCACCTTACTGCAGTTCAGTCGATCCTCGCTTCGGATCCTCTGGCTGTTAACT CCAGAGATAAGCACTCCAGAACTCCAAGATTGCAGTTGGTTTCCTTGACACATTACATGTGTAGTTTGCATTTGGCAGCATGGGCAGGCTATGCACAGGT GGTAAGCTATCTCTGCAAGCAAAAAGCTGATGTGGGTGCTACAGCAATGGACAACATGGGTGCGATTCACTTTGCTGCCCAAAAGGGTCATCTAGAGGCA GTCCGGTCTCTGGTTCAAGCTGGAGCTTCTGTTAAAACATTCACTCGGAAAGGGCTGACTCCGCTCCATTATGCAGTGCAAGGTTCACACCTCGAGCTAG TCAAGTACTTGGTGAAGAAAGGTGGAGGTCTCAACGTGAAGACGAAGGCAGGGAAGACCCCTCTCGATCATGCGGACATTCAAGAAGTGCGTGCTTTTCT GGAGGAATCGTCAAAGAAACAAGGCACGAATGCTGAAGAGAAGACCGCGAGTAGCCTGTCCGATTCCAAGCCACCGGCTGAAGACAAACTGCGGGATTTG GATGCTGAAGCTGCAAAGAGTAAGGATGATCAGGAGGGGGGAGAAGAAGGGAGTGAGAGGAAAGGAGGAGCAGATGGTGAAGACGCCGAGGAAGCATCTC CAGTTGCAAAGAAGCCTCGAATTACGCTTAACCATCTTGTCACTGAGGATGATACTCAAGAAGAGGAGACTGCTTGA
AA sequence Show only first row Show all	>Lus10001048 pacid=23178124 polypeptide=Lus10001048 locus=Lus10001048.g ID=Lus10001048.BGIv1.0 annot-version=v1.0 MTGGGKGDIHAAARSGHLTAVQSILASDPLAVNSRDKHSRTPRLQLVSLTHYMCSLHLAAWAGYAQVVSYLCKQKADVGATAMDNMGAIHFAAQKGHLEA VRSLVQAGASVKTFTRKGLTPLHYAVQGSHLELVKYLVKKGGGLNVKTKAGKTPLDHADIQEVRAFLEESSKKQGTNAEEKTASSLSDSKPPAEDKLRDL DAEAAKSKDDQEGGEEGSERKGGADGEDAEEASPVAKKPRITLNHLVTEDDTQEEETA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19150			Ankyrin repeat family protein ...		Lus10001048 [exp]	0	1
AT1G01940			Cyclophilin-like peptidyl-prol...		Lus10009237 [exp]	1.0	0.8700
AT4G19150			Ankyrin repeat family protein ...		Lus10001414 [exp]	2.2	0.8507
AT4G40030			Histone superfamily protein (....		Lus10012757 [exp]	3.2	0.8262
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038215 [exp]	4.7	0.8634
AT5G55140			ribosomal protein L30 family p...		Lus10031912 [exp]	6.0	0.8517
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10018026 [exp]	6.9	0.8504
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10011270 [exp]	8.5	0.8106
AT5G66530			Galactose mutarotase-like supe...		Lus10041758 [exp]	9.0	0.7834
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10015126 [exp]	10.2	0.8422
AT1G06050			Protein of unknown function (D...		Lus10008154 [exp]	10.4	0.7738

Compare expression of checked genes

Lus10001048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.