Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30800 243 / 3e-73 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT1G06670 225 / 9e-67 NIH nuclear DEIH-boxhelicase (.1) AT2G35920 88 / 2e-19 RNA helicase family protein (.1) AT5G04895 79 / 3e-16 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 70 / 4e-13 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G01130 69 / 4e-13 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001415 [exp] 472 / 1e-159 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10029806 [exp] 315 / 1e-99 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10020727 [exp] 306 / 4e-95 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10034126 [exp] 77 / 1e-15 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 77 / 2e-15 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009022 [exp] 76 / 3e-15 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009012 [exp] 73 / 2e-14 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009643 [exp] 72 / 4e-14 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10007938 [exp] 66 / 7e-12 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206500 [exp] 321 / 1e-101 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.010G117800 [exp] 84 / 4e-18 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G068900 [exp] 84 / 4e-18 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.010G246000 [exp] 79 / 3e-16 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G014100 [exp] 75 / 7e-15 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 74 / 2e-14 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.004G222900 [exp] 48 / 5e-06 AT1G58060 1757 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Lus10001049 pacid=23178114 polypeptide=Lus10001049 locus=Lus10001049.g ID=Lus10001049.BGIv1.0 annot-version=v1.0 ATGAATTGCCTTGACCCTGCTTTAACCATCGGTTGTGCTGCTGACTATAGAGATCCATTTACCCTCCCGATATCACCGCATGAGAAAAAGAGAGCAACTG CTCGTAGACCTGAGCTTGCTGAGATGTATGGTGGCTACAGCGATCACCTAGCGGTGGTAGCTGCTTATGATTGCTGGAGGAATGCAAAGGAAGGAGGCCA TGCACCACGCTTTTGTTCCGACTACCATGTCTCTCCCGGTACCATGCAGATGCTGCACGGTACGTGTCGGCATCTCCAAGGGGAGCTCATTCGTAACGGT TTTATCCCGGAAAAAGTCTCGAGCTGTAGCAGCAATGTTCGTGATCCCGGCATAATTCGTGCTGTTCTTGTGGCTAGTGTGGAACCAAAAGTTGGAAAAC TCTTGCCACCTAAAAATGGTAAGCGTGGTGTTGTTCAGACAGCTGATGGTGCAAAAGTCTGTCTGCATCCTCATTCGCTTAATTTCAGATTAGCTACCAA GAAAAGTGACGACTGCCCTCTGGTAATTTACGATGAAGTGACTCATGGGGATGGGGGTATGCACATACGAAATTGTACCGTTGTTGGGCTACTTCCCTCG GCTCTACTTGCTACGGAAATCGGAGTTGCTCCTGCAAATGATGATGTTTGCAGAAGTGATAATACCGATACTGAAAGTGATGAAGATGGAATGGGGGAAT TAGGTGAGCATAATGGCGTCAAGGTTATGTCTGGTCCTGATAATTCTGTAATTGTCGTTTGGATAGGTGGCTGCTTCTTGGGTCATCCGCCATCGATCTT GCTCAGATTTACTGCTTGA
AA sequence Show only first row Show all	>Lus10001049 pacid=23178114 polypeptide=Lus10001049 locus=Lus10001049.g ID=Lus10001049.BGIv1.0 annot-version=v1.0 MNCLDPALTIGCAADYRDPFTLPISPHEKKRATARRPELAEMYGGYSDHLAVVAAYDCWRNAKEGGHAPRFCSDYHVSPGTMQMLHGTCRHLQGELIRNG FIPEKVSSCSSNVRDPGIIRAVLVASVEPKVGKLLPPKNGKRGVVQTADGAKVCLHPHSLNFRLATKKSDDCPLVIYDEVTHGDGGMHIRNCTVVGLLPS ALLATEIGVAPANDDVCRSDNTDTESDEDGMGELGEHNGVKVMSGPDNSVIVVWIGGCFLGHPPSILLRFTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001049 [exp]	0	1
AT2G48060			unknown protein		Lus10035352 [exp]	3.0	0.7207
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	6.3	0.7325
AT5G46460			Pentatricopeptide repeat (PPR)...		Lus10015256 [exp]	9.2	0.7162
AT3G14090		ATEXO70D3	exocyst subunit exo70 family p...		Lus10001113 [exp]	12.3	0.6955
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004518 [exp]	14.9	0.6636
AT5G23200			unknown protein		Lus10010192 [exp]	15.4	0.7282
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	21.6	0.7175
AT1G74350			Intron maturase, type II famil...		Lus10017037 [exp]	24.0	0.6678
AT2G47790			Transducin/WD40 repeat-like su...		Lus10003441 [exp]	25.8	0.7010
					Lus10020623 [exp]	32.8	0.6481

Compare expression of checked genes

Lus10001049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.