Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17230 531 / 0 PSY PHYTOENE SYNTHASE (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001416 [exp] 741 / 0 AT5G17230 545 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10029809 [exp] 523 / 0 AT5G17230 491 / 3e-172 PHYTOENE SYNTHASE (.1.2.3) Lus10020729 [exp] 514 / 0 AT5G17230 491 / 7e-174 PHYTOENE SYNTHASE (.1.2.3) Lus10013753 [exp] 419 / 8e-146 AT5G17230 446 / 4e-156 PHYTOENE SYNTHASE (.1.2.3) Lus10039186 [exp] 412 / 1e-142 AT5G17230 442 / 1e-154 PHYTOENE SYNTHASE (.1.2.3) Lus10014576 [exp] 66 / 9e-14 AT5G17230 69 / 1e-15 PHYTOENE SYNTHASE (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G205800 [exp] 592 / 0 AT5G17230 549 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.002G056800 [exp] 578 / 0 AT5G17230 555 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.017G138900 [exp] 530 / 0 AT5G17230 630 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.001G007700 [exp] 427 / 3e-149 AT5G17230 443 / 4e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G217950 [exp] 425 / 5e-148 AT5G17230 443 / 5e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G218000 [exp] 409 / 1e-141 AT5G17230 411 / 2e-142 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081466 [exp] 241 / 3e-79 AT5G17230 260 / 9e-87 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081433 [exp] 100 / 1e-24 AT5G17230 144 / 2e-41 PHYTOENE SYNTHASE (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00494 [flax] [poplar] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Lus10001050 pacid=23178120 polypeptide=Lus10001050 locus=Lus10001050.g ID=Lus10001050.BGIv1.0 annot-version=v1.0 ATGGCTCTCCTTTGGGTTGTTGGCCCCAAAGAGAACGCAACCATTGCTTCTTCCCTCCTCAGCCTCATACCCAGAGCTGCCAGAACCCCGGGCAATCAGC GGCTGAGAATTCCGTCGCCGTCGAGTAGTAGTAATAGTAGCTGTGTGACTTCTGCTGTTTACACCGGCGCCGCAGCAGCTGTGCCGACGAGATTTTCCGA GCAGAAGGTGTACGAGGTTGTGCTGAAGCAGGCGGCGCTTGTGAAGGAGCTGCAAAAACAGACAACGGCGTCGCCGTCAGACGATGGAGCAGAGGCGGGA ACAGAGATGAACCGGGATCTATTGAACGAAGCTTACGATAGGTGCGGTGAGGTCTGCGCTGAGTACGCCAAGACTTTTTACTTGGGAACGTTGCTTATGA CACCAGAACGACGTAGAGCTGTATGGGCAATATACGTTTGGTGCAGAAGAACAGATGAGTTAGTGGACGGGCCAAATGCAACGCACATCACACCGAAGGC TCTCGATAGATGGGAGACAAGGCTGAATGATCTCTTCCAAGGTCGTCCATACGACATGTTCGATGCTGCTCTGTCCGATACAGTGTCCAACTACCCTGTC GACATCCAGCCGTTCAAGGACATGGTGGAAGGGATGAGAATGGACTTGAAGAAGTCGCGGTCCCAGAACTTCGACGAGCTCTACCTCTACTGCTACTATG TTGCTGGGACAGTTGGGCTAATGAGTGTTCCTGTAATGGGGATTGACCATGGCTCCAAGACTTCCACTGAGAGCGTCTATAATGCTGCGTTGGCTTTGGG GATTGCCAACCAGCTCCCCAACATACTCAGAGATGTTGGAGAAGATGCACGGAGAGGAAGGATATACCTACCGCAAGACGAGCTTCGAAAAGCAGGGCTA TCGGACAATGACATATTCAAAGGGAAAGTGACAGACAAGTGGAGACACTTCATGAAAGGGCAGATCAAGAGAGCGAGGATGTTCTTCGATGAGGCGGAGA AAGGCGTGGGAGAGTTGAACAGAGCGAGCAGATGGCCGGTGTGGGCTTCGCTGATCTTGTATAAGCAGATATTGGACGCCATTGAAGCCAACGACTATGA CAACTTCACCAAGCGAGCTTGCGTAGGGAAAATAAAAAAGTTCGCTTTTTTGTCTGCTGCTTATGGCCGGGTGCTTATAGGTCTTTTGGAAAGAGCCAAG TTCGCTAATAGTTCTTGA
AA sequence Show only first row Show all	>Lus10001050 pacid=23178120 polypeptide=Lus10001050 locus=Lus10001050.g ID=Lus10001050.BGIv1.0 annot-version=v1.0 MALLWVVGPKENATIASSLLSLIPRAARTPGNQRLRIPSPSSSSNSSCVTSAVYTGAAAAVPTRFSEQKVYEVVLKQAALVKELQKQTTASPSDDGAEAG TEMNRDLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNATHITPKALDRWETRLNDLFQGRPYDMFDAALSDTVSNYPV DIQPFKDMVEGMRMDLKKSRSQNFDELYLYCYYVAGTVGLMSVPVMGIDHGSKTSTESVYNAALALGIANQLPNILRDVGEDARRGRIYLPQDELRKAGL SDNDIFKGKVTDKWRHFMKGQIKRARMFFDEAEKGVGELNRASRWPVWASLILYKQILDAIEANDYDNFTKRACVGKIKKFAFLSAAYGRVLIGLLERAK FANSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001050 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	1.0	0.9263
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10026617 [exp]	2.4	0.8767
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	4.7	0.8550
					Lus10037168 [exp]	6.0	0.8638
AT1G60420			DC1 domain-containing protein ...		Lus10029148 [exp]	6.2	0.8526
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	7.0	0.8756
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10023918 [exp]	8.1	0.8956
AT1G49570			Peroxidase superfamily protein...		Lus10009901 [exp]	14.2	0.8873
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10021992 [exp]	14.4	0.8349
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10031234 [exp]	15.9	0.8165

Compare expression of checked genes

Lus10001050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.