Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06660 279 / 3e-88 JASON JASON, unknown protein AT2G30820 197 / 8e-58 unknown protein AT1G04030 66 / 4e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001417 [exp] 793 / 0 AT1G06660 228 / 3e-69 JASON, unknown protein Lus10020732 [exp] 507 / 9e-177 AT1G06660 310 / 1e-100 JASON, unknown protein Lus10003912 [exp] 99 / 2e-23 AT4G14180 68 / 8e-13 putative recombination initiation defect 1 (.1) Lus10003613 [exp] 64 / 2e-10 AT1G04030 211 / 1e-63 unknown protein Lus10027384 [exp] 56 / 6e-10 AT1G17350 51 / 1e-09 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) Lus10008231 [exp] 58 / 9e-09 AT1G04030 202 / 1e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057000 [exp] 433 / 1e-147 AT1G06660 325 / 7e-106 JASON, unknown protein Potri.005G205700 [exp] 394 / 9e-133 AT1G06660 275 / 6e-87 JASON, unknown protein Potri.002G258501 [exp] 67 / 9e-12 AT1G04030 172 / 1e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001051 pacid=23178116 polypeptide=Lus10001051 locus=Lus10001051.g ID=Lus10001051.BGIv1.0 annot-version=v1.0 ATGATACGCCCTTCCTCTTTGAAGCGTGACATGGGTTCTATTTGCAGATCTCTCTTAGGATTCCTGGATCTCTCCGTTTCTTCGGCTATGGCCTGCTTTT TCAACTGCTTCCGAGTCAGAGACGACGACAGTTTCCGCGGCCACCGCCATCCTCAACTCGTTTCCCCTGCACGGTCTGCTCCACCGACGGAAGCCGCGGT GCCTAAGAACTGTTCATCGAAGTTATTCGTGTCCGATGAAGAAGAAGATTATCCATATACTTGTGATAACAAGGGAAATCTATGTTGGTCGTCTCCCCGG ACTTGGAAAGAGCTTAGGGATGAGGCGAGTTTTCTTCAAGCTTGGGGTACTTTGCTTGAGACCCCGGGTGAACTCCGGGAAGCATCTGAGAAGCTGAAGA GTTCGCCACCTGTTGATGATGGTTCAGCTTCGGCACATTCAAAGTTCTATTCATGGATCCCTAACTCATCCTCCAAAAAGTTGTTGGCCGATATGGAAGC TGATGAGCACTCTACTACCCCTATGAAGAGTTTTGAAGAGTCTAGAAGGGATTCTATTTCTTCAGACCAGGCACCCAACAGCTGCATCTCCCATGCACAG AACACCGGAAACATCTCTATGTGTTCCATAGAAGACAGTGAAAGAACAAACATGAAAGCTGCGGTGAAACTTGAGGAGGAAGATACAGATGATGCATCTT CAGCTACTCCCTTTGTAACAACGACTAAATCTCAGCTAAGAAATAAGTCTGTTCACTTCCAAAGTGACTTTGGTACATCCTCGTCCAAAGGGACTTCATC TGGAAGCAGTGGTCAAGATCTGAAGAACTCTGACCGTTTTGGGGATCTCAGTATCTCAAAGCTCTCAACCAGGCCAACCCCACTCAAACTTTCCAGCGAG ATGCAAACACCAGGAACTGTCTTCCCAGTAAACGTAGAATCTTCAGGATATGGAAAGACTAAGGTCAGGTCTCAGTATGTTTGTTCAGTCTTGCACCCTA TTAAAGATGCTTCTCAGTGGCTGGAACTGAAAGAGGACCATGCTAAATCTGTTGAGCAGCCTGAAGATACAACCCCTTATAGAGAAGCAAGCGTAGGGAG AACTTCCCCTTCAGCAAACTTGAAGTTGGAAGCGATCTTGTCAGCTTGGTTGAAGCCTGTGTCAGCGACCAATCAAAATGGTTATGGTAAAACAGATTAC ATTGGCAAAACTCCGGGAGACAGACCAATCATTGGGATGGTTGCTGCTCACTGGAACTACGACGAGCCTATTGAAGCTCCCCCGAAATGGTGGGATGGTA ATGGCATCCCTAATACAACCACTAAATACAAGGAGGACCAAAAGGTAAGCTGGCATGCAACACCATTTGAGGAGAGGTTGGAGAAAGCTTTATCCGAAGA GAGCTTGGTTACTCAGAAGAGACCTTTGATCAGCGGGAAGCCTATAGCTTTTGATGGGTGCGAAGAAGAAAGCGACACTGCGTTCTCACAGTTATCCGCA GCAGCTGCAGCTTCATCACAACATTCCAAGTCAGTTGTCTCATACTAG
AA sequence Show only first row Show all	>Lus10001051 pacid=23178116 polypeptide=Lus10001051 locus=Lus10001051.g ID=Lus10001051.BGIv1.0 annot-version=v1.0 MIRPSSLKRDMGSICRSLLGFLDLSVSSAMACFFNCFRVRDDDSFRGHRHPQLVSPARSAPPTEAAVPKNCSSKLFVSDEEEDYPYTCDNKGNLCWSSPR TWKELRDEASFLQAWGTLLETPGELREASEKLKSSPPVDDGSASAHSKFYSWIPNSSSKKLLADMEADEHSTTPMKSFEESRRDSISSDQAPNSCISHAQ NTGNISMCSIEDSERTNMKAAVKLEEEDTDDASSATPFVTTTKSQLRNKSVHFQSDFGTSSSKGTSSGSSGQDLKNSDRFGDLSISKLSTRPTPLKLSSE MQTPGTVFPVNVESSGYGKTKVRSQYVCSVLHPIKDASQWLELKEDHAKSVEQPEDTTPYREASVGRTSPSANLKLEAILSAWLKPVSATNQNGYGKTDY IGKTPGDRPIIGMVAAHWNYDEPIEAPPKWWDGNGIPNTTTKYKEDQKVSWHATPFEERLEKALSEESLVTQKRPLISGKPIAFDGCEEESDTAFSQLSA AAAASSQHSKSVVSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06660		JASON	JASON, unknown protein		Lus10001051 [exp]	0	1
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011770 [exp]	10.9	0.7317
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10035360 [exp]	40.2	0.6517
AT2G23440			unknown protein		Lus10009347 [exp]	78.3	0.6138
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10023274 [exp]	111.7	0.6006

Compare expression of checked genes

Lus10001051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.