Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04520 200 / 1e-62 PDLP2 plasmodesmata-located protein 2 (.1) AT5G43980 193 / 5e-60 PDLP1, PDLP1A PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) AT2G33330 193 / 8e-60 PDLP3 plasmodesmata-located protein 3 (.1) AT5G37660 100 / 1e-24 PDLP7 plasmodesmata-located protein 7 (.1.2) AT2G01660 99 / 2e-24 PDLP6 plasmodesmata-located protein 6 (.1.2) AT3G04370 100 / 5e-24 PDLP4 plasmodesmata-located protein 4 (.1.2) AT1G70690 92 / 2e-21 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT3G60720 91 / 6e-21 PDLP8 plasmodesmata-located protein 8 (.1) AT5G48540 64 / 9e-12 receptor-like protein kinase-related family protein (.1) AT1G63550 61 / 2e-10 Receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001418 [exp] 273 / 2e-92 AT5G43980 122 / 9e-34 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10014475 [exp] 186 / 5e-57 AT1G04520 391 / 1e-137 plasmodesmata-located protein 2 (.1) Lus10023726 [exp] 186 / 1e-56 AT1G04520 389 / 2e-136 plasmodesmata-located protein 2 (.1) Lus10020814 [exp] 95 / 2e-22 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2) Lus10016710 [exp] 82 / 1e-17 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2) Lus10010362 [exp] 77 / 7e-16 AT3G60720 259 / 7e-85 plasmodesmata-located protein 8 (.1) Lus10038227 [exp] 69 / 3e-13 AT5G48540 261 / 1e-87 receptor-like protein kinase-related family protein (.1) Lus10036497 [exp] 69 / 5e-13 AT3G60720 210 / 9e-67 plasmodesmata-located protein 8 (.1) Lus10018377 [exp] 62 / 1e-10 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257300 [exp] 257 / 8e-85 AT1G04520 243 / 2e-79 plasmodesmata-located protein 2 (.1) Potri.008G171700 [exp] 199 / 3e-62 AT1G04520 349 / 3e-121 plasmodesmata-located protein 2 (.1) Potri.010G065800 [exp] 192 / 1e-59 AT1G04520 337 / 2e-116 plasmodesmata-located protein 2 (.1) Potri.013G048200 [exp] 186 / 3e-57 AT1G04520 214 / 3e-68 plasmodesmata-located protein 2 (.1) Potri.004G086000 [exp] 96 / 1e-22 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.008G133500 [exp] 92 / 2e-21 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.017G130800 [exp] 90 / 1e-20 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.010G108100 [exp] 87 / 1e-19 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.014G067000 [exp] 83 / 4e-18 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1) Potri.002G249600 [exp] 64 / 9e-12 AT5G48540 256 / 7e-86 receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10001052 pacid=23178119 polypeptide=Lus10001052 locus=Lus10001052.g ID=Lus10001052.BGIv1.0 annot-version=v1.0 ATGGGTTTCCCTTTCTTCTTCCTCTCAATTTGCCATCTTCTTCTTTCTTCACCTTCATCTGCAGCAGTAGATTTAACCAATTTGATTTTCAAGGGCTGTT CTGGCCAGAAATTCAACGACCAATCCGGGACATCCTCTCAAAACCTAAAGACCCTATTCCAATCCCTTCTGGAACAATCCTCCCAGAAGACCTACTCCAC AGCCGTCTCGGGAGACATCACCGGCCTCTACCAATGCCGGGGAGACCTCTCCACGGCCCAGTGCTACGACTGTGTCAGCACAATCCCGCAGAAGGTGAAC AAGCTCTGTGGCGGCGACACGGTGGCTGCCAGAGTGCATCTCACTGGTTGCTGGTTGAAGTACGAGGTGTCTGGGTTCAAGCCGACGTCGGATGAGGAGC TTCTGTTTAAGGTTTGCGGGTCATCCTCGACGGCGGCGGTTGGAGCTGGGTTTGAGCAGAGGAGGGACGCTGCGATGGACGCGATGATGAAGTCGTCGAG TAGTAATGGACTGTTTGTGACGGGGAGTTACCAGTCGGTGTTCTACTTGGCGCAGTGCCAAGGGGATTTGGCCGGCGGGAATTGCAGGAGTTGTGTGAAG AGCGCGGTGGACGCTGCCAAGTCGCAGTGCGGTGGGTCGATCACCGCTCAGGCGTACTTGAACAAGTGCTATGTAAGCTATGCTTACTACCCAAATGGAG TCCCTTCCGTAATCTCTTCCAACTCAGGTGGTGGAGATGGTGGAGGGAAGCAGCACACTGCGAGGACAGTGGCGCTGGCAGTTGGAGGAGTGGCGGCGGT GGGCCTGCTTCTGGCGTGCTTGTTGGTTATGAAGTCGGCGGTGAAGAAAAGTCGCGGTGGAGGTGGTAAGCACGGTGGTGGCGGAGGAGGAGGAGGTTGG AGCTGA
AA sequence Show only first row Show all	>Lus10001052 pacid=23178119 polypeptide=Lus10001052 locus=Lus10001052.g ID=Lus10001052.BGIv1.0 annot-version=v1.0 MGFPFFFLSICHLLLSSPSSAAVDLTNLIFKGCSGQKFNDQSGTSSQNLKTLFQSLLEQSSQKTYSTAVSGDITGLYQCRGDLSTAQCYDCVSTIPQKVN KLCGGDTVAARVHLTGCWLKYEVSGFKPTSDEELLFKVCGSSSTAAVGAGFEQRRDAAMDAMMKSSSSNGLFVTGSYQSVFYLAQCQGDLAGGNCRSCVK SAVDAAKSQCGGSITAQAYLNKCYVSYAYYPNGVPSVISSNSGGGDGGGKQHTARTVALAVGGVAAVGLLLACLLVMKSAVKKSRGGGGKHGGGGGGGGW S

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001052 [exp]	0	1
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	1.7	0.8785
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	2.4	0.8650
AT1G69260		AFP1	ABI five binding protein (.1)		Lus10036898 [exp]	4.9	0.8621
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Lus10001373 [exp]	6.6	0.7995
AT4G36010			Pathogenesis-related thaumatin...		Lus10028448 [exp]	6.9	0.7994
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10040872 [exp]	8.7	0.8518
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	8.7	0.8465
AT4G13200			unknown protein		Lus10011869 [exp]	9.8	0.8222
AT1G61600			Protein of unknown function (D...		Lus10035372 [exp]	15.6	0.8316
AT3G53810			Concanavalin A-like lectin pro...		Lus10040774 [exp]	18.8	0.8231

Compare expression of checked genes

Lus10001052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.