Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30860 150 / 1e-47 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G30870 144 / 1e-44 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT3G03190 119 / 1e-34 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT5G17220 115 / 4e-33 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT3G62760 97 / 3e-26 ATGSTF13 Glutathione S-transferase family protein (.1) AT4G02520 96 / 1e-25 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1) AT2G47730 97 / 2e-25 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT1G02950 94 / 2e-24 GST31, ATGSTF4 GLUTATHIONE S-TRANSFERASE 31, glutathione S-transferase F4 (.1.2.3.4) AT2G02930 92 / 4e-24 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT1G49860 92 / 1e-23 ATGSTF14 glutathione S-transferase (class phi) 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001419 [exp] 211 / 5e-71 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 182 / 1e-59 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 181 / 3e-59 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10029816 [exp] 160 / 5e-51 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 155 / 8e-49 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 132 / 6e-40 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10023511 [exp] 122 / 1e-35 AT5G17220 240 / 2e-80 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Lus10004151 [exp] 99 / 1e-26 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10030414 [exp] 95 / 3e-25 AT2G47730 267 / 1e-90 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138800 [exp] 130 / 4e-39 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G207479 [exp] 104 / 7e-29 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 104 / 7e-29 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207093 [exp] 103 / 9e-29 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G015200 [exp] 101 / 7e-28 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207672 [exp] 100 / 2e-27 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.014G132200 [exp] 95 / 3e-25 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G015100 [exp] 90 / 3e-23 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001053 pacid=23178125 polypeptide=Lus10001053 locus=Lus10001053.g ID=Lus10001053.BGIv1.0 annot-version=v1.0 ATGCAACCTTTGATCTGCTCTGGACAACCATTTGGGTCTCTCCCCTTGATTCAAGATGGGGACTACACTTTGTACGAATCAAGGGCAATCATGAGGTACT ACGCAGAGAAGTACAAGTCACAAGGGACTGAGTTGCTTGGGCAGACCATAGAAGGAAGAGGGATGGTTGAACAATGGCTTGAAGTTGAAGGGCATACCTA CAACCCACATGTCTACAACTTGACAATTCACCTCATGTTCTACCCTGCTGTCGGAACTCCGTCCGACGAGAGGATCGTCGCAGAGAGCGAAGCGAAGCTA GGGAAAGTGCTCGACATCTACGAAGAGAGGCTGTCGAAGAGCAAAGTACTTGGCTGGTGA
AA sequence Show only first row Show all	>Lus10001053 pacid=23178125 polypeptide=Lus10001053 locus=Lus10001053.g ID=Lus10001053.BGIv1.0 annot-version=v1.0 MQPLICSGQPFGSLPLIQDGDYTLYESRAIMRYYAEKYKSQGTELLGQTIEGRGMVEQWLEVEGHTYNPHVYNLTIHLMFYPAVGTPSDERIVAESEAKL GKVLDIYEERLSKSKVLGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001053 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10015392 [exp]	10.0	0.8873
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10015192 [exp]	12.0	0.8704
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	14.0	0.8743
AT1G07120			unknown protein		Lus10031863 [exp]	14.6	0.8859
AT1G27500			Tetratricopeptide repeat (TPR)...		Lus10002376 [exp]	16.4	0.8798
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10021637 [exp]	19.7	0.8627
AT1G47410			unknown protein		Lus10006481 [exp]	37.1	0.8531
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	38.3	0.8699
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10021259 [exp]	39.5	0.8240
AT1G13900			Purple acid phosphatases super...		Lus10004661 [exp]	45.7	0.8663

Compare expression of checked genes

Lus10001053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.