Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59110 680 / 0 Protein kinase superfamily protein (.1) AT2G42960 677 / 0 Protein kinase superfamily protein (.1) AT1G56720 568 / 0 Protein kinase superfamily protein (.1.2.3) AT1G09440 538 / 0 Protein kinase superfamily protein (.1) AT5G18500 525 / 0 Protein kinase superfamily protein (.1.2) AT3G17420 496 / 1e-171 GPK1 glyoxysomal protein kinase 1 (.1) AT4G01330 457 / 5e-156 Protein kinase superfamily protein (.1.2) AT1G01540 451 / 9e-154 Protein kinase superfamily protein (.1.2) AT4G02630 435 / 5e-147 Protein kinase superfamily protein (.1) AT4G34500 418 / 3e-141 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001423 [exp] 891 / 0 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10029788 [exp] 756 / 0 AT3G59110 734 / 0.0 Protein kinase superfamily protein (.1) Lus10020747 [exp] 755 / 0 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10006215 [exp] 563 / 0 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036863 [exp] 496 / 3e-171 AT1G56720 580 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10018722 [exp] 450 / 2e-152 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 447 / 1e-151 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 446 / 4e-151 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036386 [exp] 439 / 9e-149 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059000 [exp] 778 / 0 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 769 / 0 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 647 / 0 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 619 / 0 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G214200 [exp] 553 / 0 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G001600 [exp] 547 / 0 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 468 / 9e-160 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 444 / 7e-151 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G115600 [exp] 426 / 1e-143 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 421 / 1e-141 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001055 pacid=23178121 polypeptide=Lus10001055 locus=Lus10001055.g ID=Lus10001055.BGIv1.0 annot-version=v1.0 ATGGTGGACAATGTACTAGTCGTTGTGCTGCCTGAAAGGAGGGGACTTCAGCACAGAAGTACAATGTCGTCCGAGAGCTTGAACGCCGAGTTAACCAAGA AATCATTTTTGGGTTTGAAACTATATGTCCTGATTGGGATATCAGTAGCTGCCTTCATAGTTTTGATTCTTTGCATCCTGTCAGTATGGTCTTTTCGTAG GAGATCTAGAAGATCAGTGGGATCCTTTACACAGATACCAAATGTTTCAAAGGATATTAGGGTTGACAGGGTTGGGGCTCAGACCTACAATGACAAACCA GAAAGTTTATTCTTATCTATCAATGATAAATCAAGCGATAAGAATTCAGAGAAGATGCCAAGTCATCTGGGAATGAGCAAGTCAAGTGATCATGATAACA TGAGCCAATGTAGCTCAGTTTATCATCATGAGAAAGGATTTAGCTCTCATTCTGGGGAAGAAGGAAGCTCCGGAACAGCAAGGAAGCAATCCTCATATCC AGGACTTGTGACAGCATCCCCACTGATTGGGTTACCAGAATTTTCTCATCTGGGTTGGGGTCATTGGTTTACTCTTAGGGATCTTGAGTTTGCAACGAAT CGTTTTGCCACAGAGAATGTGATCGGCGAGGGTGGATATGGGGTTGTTTACAAAGGAAGACTCGTTAATGGAACAGAGGTAGCTGTGAAGAAAATCCTTA ACAATCTGGGACAGGCGGAGAAGGAATTCAGAGTTGAAGTGGAGGCCATTGGTCATGTTCGGCATAAAAATCTTGTCCGGCTTCTTGGATATTGTATGGA AGGGGTTCATAGGATGCTTGTGTACGAATATGTGAACAATGGCAACTTAGAACAGTGGCTTCATGGGGCGATGCGTCATCGTGGTATCCTCACTTGGGAG GCTCGTATGAAAGTTCTCCTTGGGACTGCTAAGGCGCTTGCTTATTTGCATGAAGCCATAGAGCCAAAAGTTGTTCACCGTGACATAAAGTCGAGCAATA TCTTGATTGATGATGAGTTTAATTCCAAGGTGTCTGATTTCGGATTGGCAAAGCTTTTGGATTCAGGAGAGAGTCACATCACGACAAGAGTTATGGGTAC ATTTGGATATGTAGCACCAGAGTATGCCAATACCGGCTTGTTGAATGAGAAGAGTGACATTTATAGCTTCGGTGTTCTTCTGGTAGAAGCAGTCACAGGA AGAGATCCTGTGGATTATGGAAGACCCGCTAATGAGGTCAACCTTGTGGAGTGGCTTAAGATGATGGTTGGGACCAAGAGAGCTGAGGAAGTTGTGGACC CAAATCTTGAAGTTAGACCTGCTACTCGTGCTCTAAAACGGGCTCTCTTGGTTGCACTTCGCTGTGTGGATCCTGATTCAGAAAAGAGACCGAAAATGAG TCAGGTTGTGCGGATGCTTGAAGCTGAAGAGTACCCATTCCGTGAGGACCGGAGAAACCGGAAGAGTCGAACAGCAAGCATGGATATCGAATCAATGAAG GAATCAACGGAACTGGAAAGCAAGGTAGAGAACTTGGGTGAGAACGAGAGCACAGTTCCGCCGGCAGTATCACCTTTCTCAGCTATAGGCGTAGAGATAT CTCTCCTCAACGACGCACTCTCAAGGGAGCTTCGTCCCTACACCACCCTTCCCCCACCGCTGACGAGTGCATATGGATCCCAAACTCCGTCGCCGTCCGC ATCCACCGCCGGCTCCAAATTGACAGAGGAAGAGCAGAACAGAGCGCTTAACAAACTGAGGAGAGAGGTGTACACCCCACCGTTGCCGCCTCTGGGAAGC CGATTGTGCCTCTATGACAGAGACCGATTCGCTGAAGCGGTGGCAGCGAATGCGAAACTGGCGGAGGAAGGAGGGAAGAGGTGA
AA sequence Show only first row Show all	>Lus10001055 pacid=23178121 polypeptide=Lus10001055 locus=Lus10001055.g ID=Lus10001055.BGIv1.0 annot-version=v1.0 MVDNVLVVVLPERRGLQHRSTMSSESLNAELTKKSFLGLKLYVLIGISVAAFIVLILCILSVWSFRRRSRRSVGSFTQIPNVSKDIRVDRVGAQTYNDKP ESLFLSINDKSSDKNSEKMPSHLGMSKSSDHDNMSQCSSVYHHEKGFSSHSGEEGSSGTARKQSSYPGLVTASPLIGLPEFSHLGWGHWFTLRDLEFATN RFATENVIGEGGYGVVYKGRLVNGTEVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCMEGVHRMLVYEYVNNGNLEQWLHGAMRHRGILTWE ARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNSKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLVEAVTG RDPVDYGRPANEVNLVEWLKMMVGTKRAEEVVDPNLEVRPATRALKRALLVALRCVDPDSEKRPKMSQVVRMLEAEEYPFREDRRNRKSRTASMDIESMK ESTELESKVENLGENESTVPPAVSPFSAIGVEISLLNDALSRELRPYTTLPPPLTSAYGSQTPSPSASTAGSKLTEEEQNRALNKLRREVYTPPLPPLGS RLCLYDRDRFAEAVAANAKLAEEGGKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	0	1
AT3G59110			Protein kinase superfamily pro...		Lus10001423 [exp]	1.0	0.9689
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	1.7	0.9306
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	2.0	0.9269
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	2.0	0.9371
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10021637 [exp]	4.5	0.9188
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	5.5	0.9103
AT2G24370			Protein kinase protein with ad...		Lus10026989 [exp]	5.7	0.8999
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	6.0	0.8924
AT5G39785			Protein of unknown function (D...		Lus10036751 [exp]	7.5	0.9060
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	8.3	0.8878

Compare expression of checked genes

Lus10001055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.