Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05570 1580 / 0 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT2G31960 1570 / 0 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT1G06490 1567 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT3G59100 1499 / 0 ATGSL11 glucan synthase-like 11 (.1) AT3G14570 1429 / 0 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT5G36870 1421 / 0 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT2G36850 1245 / 0 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1) AT5G13000 1233 / 0 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT2G13680 1208 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT3G07160 1000 / 0 CALS9, ATGSL10 glucan synthase-like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001424 [exp] 1953 / 0 AT1G06490 2926 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10020750 [exp] 1696 / 0 AT1G06490 2003 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10007327 [exp] 1607 / 0 AT1G06490 1448 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10003920 [exp] 1503 / 0 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10013744 [exp] 1483 / 0 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10037469 [exp] 1448 / 0 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10039199 [exp] 1241 / 0 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10020893 [exp] 1162 / 0 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10033483 [exp] 1122 / 0 AT2G13680 1447 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G203500 [exp] 1610 / 0 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.002G058700 [exp] 1595 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.001G230000 [exp] 1529 / 0 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G012200 [exp] 1236 / 0 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 1229 / 0 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G058300 [exp] 1204 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.011G095100 [exp] 1131 / 0 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.015G089300 [exp] 1051 / 0 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.011G052400 [exp] 1040 / 0 AT4G04970 2583 / 0.0 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) Potri.001G011900 [exp] 1039 / 0 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02364 [flax] [poplar] Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence Show only first row Show all	>Lus10001056 pacid=23178123 polypeptide=Lus10001056 locus=Lus10001056.g ID=Lus10001056.BGIv1.0 annot-version=v1.0 ATGGCAAGCACCAGCGGAACCAAGAGCGACCTCCCGAGGTCCTTCTCCCGCGCTTCTACCATGATGGTAGACTTGCGGGATGGAGACGCTTCCGTGATTG ACAGTGAGGTTGTCCCGTCTTCTTTGGCTTCAATTGCTCCAATTCTCCGTGTTGCTAACGAGATTCAGGATGATAATCCCAGAGTCGCCTATCTATGTCG GTTCCATGCATTTGAGAAGGCTCATAAGATGGACCCAACATCAAGTGGACGTGGGGTCCGTCAATTCAAGCCTAATAAGATGGCCCCACAATCAGTTGGA CGGGGGTTCCCTCAATTCAAGACGTATCTGCTGCACAGATTAGAGAGGGAAGAAAGTGAAACAGAACCCCGTCTTGCAAGAACTGATCCTAGAGAAATTC AATTATATTATCAGAAGTTTTATGAGGAAAATATAAGAGATGGACAATATACAAAAAGACCGGAGGAGATGGCCAAGATTCTTCAGATTGCATCAGTACT ATATGACGTGCTGAAAACAGTGGTACCTGCTTCCAGAGTCGATGAAGAGACACATAAATATGCTAAGGATGTTGAGAAGAAAAGGGAGCAATATGAGCAC TATAACATTCTTCCATTGTATTCCGTTGGCTTAAAACCGGCAATAATGGAACTTCCTGAGATTAAAGCTGCATTTAATGCTGTACGCAATGTGGACAATC TTCCAATGCCTAGAATCAGTCCAATTTATAGTGCCATTCATGATGTGCCAACTGGAAAGATCAAACCTGTCAATGATATACTTGAATGGCTTTCTTCACT TTTTGGTTTCCAGAAAGGAAATGTGGCAAATCAGAGAGAGCACCTAATATTGTTGTTAGCCAATATGGACACGAGGAAAAGGAGCCTTGACGATTACACA GAGTTAAATACTAGCACAATACAACAACTGATGAACAAAACTTTCAAAAATTATCTCTCCTGGTGTCACTATTTGCGAGTTGAAAGCAATCTTAGGTTCC CAGGAGGATTTGATAAACCACAACTGGAGCTTATCTACATTGGACTGTATCTACTAATATGGGGCGAAGCTTCAAACGTACGCTTCATGCCGGAATGCAT TTGCTATATCTTCCACAATAGATCTACTCAGAGAGGCAGCGGGAGGAGGAAGCCCAAGACTAATTTTGTTGAAGTCCGTACTTTCTGGCACCTTTATAGA ACCTTCGACAGAATGTGGATATTTTTCATATTAGCTTTTCAGGCTATGTTTATCATTGCTTGGAATGCTGGATCTCTTGCTGGCATTTTTGACCCAGATG TCTTCAGAAGTGTTTTAAGCATCTTTATCACTGCTGCTTTTCTCAATCTTCTGCGAGCTATTCTTGATATAATCCTCAATCTTTACGCATGGAGGAGCTT AAAGTTTACACAAATACTGCGGTATTTGCTCAAATTTGCAGTAGCAGCAGCCTGGGCTGTTGCTATGCCGATTGCTTATGCCAAATCTGTTCAGAACCCA ACAGGACTTATCAAATTTTTCAGCAGCTGGGCTAGTGACTGGCAGAATCAATCTCTTTATAATTATGCTGTTGCTATTTATTTGATACCCAACATCCTGT CTATTCTGTTGTTTGTGCTTCCACCATTTCAAAGGACAATGGAAAAATCAAACTGGCGGATATTCACTCTTCTTCTATGGTGGGCTCAGGCAAGTATATT TAGCACTTTAAATTCTCGGTGCCTTACTGTAGATGTGCTTGCAATGCACACATGCATGATCGTTCATCTTTCATTTCCTTGTCCGCAGATACTGCCTCTT GTTGAACCAACAAAGCTGATCATGGATATGAGTATCGATAATTATCAGTGGCATGAGTTCTTCCCACATGCAAAGCACAACCTTGGCGCTGTTATTGCAA TATGGGCACCCATTGTCCTGGTATATTTTATGGATACACAAATATGGTACGCAATATTTTCAACTATATTCGGTGGGATTCGTGGAGCCTTCAGCCATCT GGGTGAGATAAGGACTCTTGGTATGCTACGGTCCAGATTTGAGGACGTGCCCTTGGCTTTCAGTAACTGCCTTGTGCCATCATCAAAGAAAAGAGGCAAA AGGAAACATTTGGATGAGTCAGCCGAAAGGCAAAGCATCGCCAATTTTTCTCATGTCTGGAATGAGATCATTAACTCTATGAGATTGGAGGATCTGATCA GCAATGACGAAAGAGATTTACTACTGGTACCATCTTCCTCTAATGACGTATCAGTCATCCAATGGCCTCCATTTTTGCTTGCGAGCAAGATTCCTATCGC ACTGGACATGGCAAAAGATTTCAAGGGAACCAATGGTGCTGATCTATTCAGGAGAATGGATGAGTATATGCGGTTTGCTGTTATTGAATTTTACGAGACC ATTAGAGACATAATTTACAGCTTGCTGCAAGATGATTCAGACAGGATAATCCTTGAAAGAGCTCACTATGCCACAGAAGATGACGAGAGTGTCAAGAAAG AGCAGAGGTTTGGTAAGATAAACATTGACCTCATACGAAACAAAACTTGGAGAGAGAAGGTTGTTAGACTTCATTTGCTCTTGACAACGAAGGAATCTGC AATAAATGTTCCATCCAACTTAGATGCGCGTCGCCGTATCACATTCTTTGCAAATTCCTTGTTCATGCACATGCCAAGTGCTCCGAAAGTGAGGGACATG CTCTCTTTTAGTGTATTGACTCCTTATTACAAAGAAGATGTCCTCTACTCAGAGGAAGAGCTTAATCATGAAAATGAAGATGGCATCACAATTTTGTTTT ATCTTCAAACGATATATCGCGATGAGTGGAGAAATTTCGAGGAAAGAATATCAGGTTCCGCTCTAAAGGAAAAGGCAGAGCTTACTCGTCACTGGGTATC GTATAGGGCACAGACACTTTCAAGAACAGTTAGGGGGATGATGTACTACAGACGGGCTCTTGAACTCCAGTACTTGCTGGAATTTGCAGGAGAAAATGCT ATTATCAATGGCCTCCCCAGCATGGAACTCAGTAATGAAGATAGGTCTCTGTCAGATCGTGCACAGGCTCTTGCTGATCTGAAGTTTACCTATGTGGTTT CATGTCAGATTTACGGTGCTCAGAAAAAGTCCAGCGATGGTCGAGACCGGAGCTGTTACAATAACATTCTGAATCTGATGTTAAAGTACCCTTCACTACG TGTTGCATACATTGATGAGAGAGAAGAGGCAGTGAATGGAAAGCAGCAGAAAGTTTACTATTCTGTGCTTGTTAAAGGGGGTGATAAGTTGGATGAGGAA ATATACAGAATAAAGCTTCCTGGGCCACCTACAGAAATAGGTGAAGGTAAACCTGAAAATCAGAACCACGCAATTATTTTCACCCGTGGAGAGGCTTTGC AAACCATTGATATGAATCAGGATAACTACTTCGAAGAAGCTTTCAAAATGAGAAATGTGTTGGAGGAGTTCTTAACACCTCGCCATGGGCCACGCAAGCC AACAATCCTGGGCCTCAGGGAGCATATATTTACTGGCAGTGTTTCATCGCTTGCCTGGTTTATGTCCAACCAAGAAACAAGCTTCGTTACGATTGGCCAA CGCATTTTGGCCAACCCTTTAAGGGTACGTTTCCATTATGGTCATCCTGACATATTTGACCGGCTCTTCCATATAACGAGGGGTGGGATCAGCAAAGCTT CAAAAATCATAAACCTGAGCGAAGATATATTTTCAGGATTCAATTCTACATTACGTGGTGGATATATAACACATCACGAGTACATACAAGTGGGCAAAGG ACGTGATGTTGGGATGAATCAGATTTCTCTTTTTGAAGCAAAGGTTGCAAACGGTAATGGGGAGCAGACTCTTAGCCGTGATGTATATCGTCTTGGGCGC CGATTCGACTTCTACAGAATGCTGTCTTTCTATTTTACAACAGTTGGTTTTTATTTCAGTAGCATGATAACCGTGATTACGGTGTACATATTTTTGTATG GACGTATGTACATGGTAATGAGTGGAGTAGAGGCGGAGATTCTGACGAATCCAACCATTCGTCAAAGCAATGCACTTGAACAAGCTTTGGCCACTCAGTC CATATTTCAGTTAGGTTTGCTACTAGTCTTGCCAATGGTCATGGAAATCGGCCTGGAGAAAGGATTTCGCTCTGCTTTAGGTGATTTCATCATTATGCAG CTGCAGCTAGCCTCTGTCTTCTTCACATTTCAGCTTGGAACTAAAGCTCATTACTACGGCAAGACAATTCTGCATGGTGGTTCCAAATATAGGGCCACTG GACGTGGGTTCGTTGTGTTCCATGCTAAGTTTGCAGAAAACTATAGGCTATACTCACGGAGTCACTTCGTGAAGGGATTAGAGTTGACCATGTTATTGGT CATATATGAAGTCTATGGGGAATCTTATCGCAGTTCAAGTCTGTACTTCTTCATTACCTTCTCCATGTGGTTCCTTGTTGGTTCCTGGTTGTTTGCACCA TTCGTTTTTAATCCATCTGGCTTTGATTGGCAAAAGACCGTGGATGATTGGACTGATTGGAAACGTTGGATGGGGAATCGTGGTGGGATTGGGATTCCAC CGGAAAAAAGTTGGGAATCTTGGTGGGACGGTGAACAGGAACATCTGAAACACACAAACCTAAGGGGTCGGATACTGGACATAATTCTCGCCTTTCGCTT CTTTGTCTACCAGTATGGCATCGTCTACCACCTTGACATAGCTCACCGAATCAAAACTCTACTGGCACAGAGTATCCCTTACGTTACGTTACGAGCTTAT ATATATGTATGTGTGATTCTCCTGATTTCTGGTCCTCAGGTTTATGGACTTTCGTGGGTGGTGATGATCACTGCTCTATTAGTCTTCAAGATGGTGTCAA TGGGGAGAAGGAAATTCGGCACAGATTTCCAGCTAACATTCAGAATCCTCAAAGCACTTCTCTTCATGGGTTTCCTGTCCGTCTTAACTGTGTTATTCGT TGTCTGCAACCTGACGATAACGGATCTGTTTGCTTCCATCCTCGCCTTCCTTCCCACTGGATGGGCTATCCTTCTCATTGGGCAAGCATGCAGGGGACTG TTCAAGGCAATTGGGCTGTGGGATTCAATAAAGGAGCTGGGAAGAGGGTACGAATACATAATGGGACTGTTGATCTTCAGCCCCACAGCCATATTGTCGT GGTTCCCTTTCGTGAACGAGTTCCAAACTCGGCTGCTCTTCAACCAAGCTTTCAGTAGAGGCCTCCAGATTTCAATGATTCTTCAGGGCAGGAAAGATAA AGACGATGCAGCTGCCAAGAAAGATAAGCCTCCCCCGCCAAAATGA
AA sequence Show only first row Show all	>Lus10001056 pacid=23178123 polypeptide=Lus10001056 locus=Lus10001056.g ID=Lus10001056.BGIv1.0 annot-version=v1.0 MASTSGTKSDLPRSFSRASTMMVDLRDGDASVIDSEVVPSSLASIAPILRVANEIQDDNPRVAYLCRFHAFEKAHKMDPTSSGRGVRQFKPNKMAPQSVG RGFPQFKTYLLHRLEREESETEPRLARTDPREIQLYYQKFYEENIRDGQYTKRPEEMAKILQIASVLYDVLKTVVPASRVDEETHKYAKDVEKKREQYEH YNILPLYSVGLKPAIMELPEIKAAFNAVRNVDNLPMPRISPIYSAIHDVPTGKIKPVNDILEWLSSLFGFQKGNVANQREHLILLLANMDTRKRSLDDYT ELNTSTIQQLMNKTFKNYLSWCHYLRVESNLRFPGGFDKPQLELIYIGLYLLIWGEASNVRFMPECICYIFHNRSTQRGSGRRKPKTNFVEVRTFWHLYR TFDRMWIFFILAFQAMFIIAWNAGSLAGIFDPDVFRSVLSIFITAAFLNLLRAILDIILNLYAWRSLKFTQILRYLLKFAVAAAWAVAMPIAYAKSVQNP TGLIKFFSSWASDWQNQSLYNYAVAIYLIPNILSILLFVLPPFQRTMEKSNWRIFTLLLWWAQASIFSTLNSRCLTVDVLAMHTCMIVHLSFPCPQILPL VEPTKLIMDMSIDNYQWHEFFPHAKHNLGAVIAIWAPIVLVYFMDTQIWYAIFSTIFGGIRGAFSHLGEIRTLGMLRSRFEDVPLAFSNCLVPSSKKRGK RKHLDESAERQSIANFSHVWNEIINSMRLEDLISNDERDLLLVPSSSNDVSVIQWPPFLLASKIPIALDMAKDFKGTNGADLFRRMDEYMRFAVIEFYET IRDIIYSLLQDDSDRIILERAHYATEDDESVKKEQRFGKINIDLIRNKTWREKVVRLHLLLTTKESAINVPSNLDARRRITFFANSLFMHMPSAPKVRDM LSFSVLTPYYKEDVLYSEEELNHENEDGITILFYLQTIYRDEWRNFEERISGSALKEKAELTRHWVSYRAQTLSRTVRGMMYYRRALELQYLLEFAGENA IINGLPSMELSNEDRSLSDRAQALADLKFTYVVSCQIYGAQKKSSDGRDRSCYNNILNLMLKYPSLRVAYIDEREEAVNGKQQKVYYSVLVKGGDKLDEE IYRIKLPGPPTEIGEGKPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKMRNVLEEFLTPRHGPRKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQ RILANPLRVRFHYGHPDIFDRLFHITRGGISKASKIINLSEDIFSGFNSTLRGGYITHHEYIQVGKGRDVGMNQISLFEAKVANGNGEQTLSRDVYRLGR RFDFYRMLSFYFTTVGFYFSSMITVITVYIFLYGRMYMVMSGVEAEILTNPTIRQSNALEQALATQSIFQLGLLLVLPMVMEIGLEKGFRSALGDFIIMQ LQLASVFFTFQLGTKAHYYGKTILHGGSKYRATGRGFVVFHAKFAENYRLYSRSHFVKGLELTMLLVIYEVYGESYRSSSLYFFITFSMWFLVGSWLFAP FVFNPSGFDWQKTVDDWTDWKRWMGNRGGIGIPPEKSWESWWDGEQEHLKHTNLRGRILDIILAFRFFVYQYGIVYHLDIAHRIKTLLAQSIPYVTLRAY IYVCVILLISGPQVYGLSWVVMITALLVFKMVSMGRRKFGTDFQLTFRILKALLFMGFLSVLTVLFVVCNLTITDLFASILAFLPTGWAILLIGQACRGL FKAIGLWDSIKELGRGYEYIMGLLIFSPTAILSWFPFVNEFQTRLLFNQAFSRGLQISMILQGRKDKDDAAAKKDKPPPPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001056 [exp]	0	1
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001424 [exp]	1.0	0.9859
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Lus10034400 [exp]	4.4	0.8093
AT5G06850			C2 calcium/lipid-binding plant...		Lus10037480 [exp]	4.6	0.8631
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10003920 [exp]	4.9	0.8539
AT1G73850			Protein of unknown function (D...		Lus10038936 [exp]	6.9	0.8438
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10034567 [exp]	7.2	0.8699
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10001799 [exp]	8.5	0.7904
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Lus10031192 [exp]	10.6	0.8137
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	13.5	0.8149
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	13.6	0.8516

Compare expression of checked genes

Lus10001056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.