Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26742 883 / 0 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G22330 488 / 1e-164 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 480 / 1e-161 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT5G62190 358 / 1e-113 PRH75 DEAD box RNA helicase (PRH75) (.1) AT1G55150 256 / 4e-77 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 256 / 1e-75 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 255 / 5e-75 DEAD box RNA helicase family protein (.1.2) AT5G63120 252 / 2e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G06480 254 / 7e-72 DEAD box RNA helicase family protein (.1) AT1G31970 241 / 5e-71 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001425 [exp] 1240 / 0 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10035410 [exp] 481 / 1e-161 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027268 [exp] 481 / 3e-161 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 478 / 4e-161 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 478 / 6e-160 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027388 [exp] 352 / 4e-111 AT5G62190 804 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10015020 [exp] 345 / 2e-108 AT5G62190 778 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10038898 [exp] 339 / 3e-106 AT5G62190 768 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10031683 [exp] 313 / 2e-96 AT5G62190 748 / 0.0 DEAD box RNA helicase (PRH75) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G000500 [exp] 972 / 0 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 952 / 0 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.006G024100 [exp] 479 / 1e-161 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.016G023100 [exp] 476 / 5e-160 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.015G133400 [exp] 357 / 5e-113 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.012G131000 [exp] 355 / 4e-112 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.003G038300 [exp] 249 / 2e-74 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G152400 [exp] 260 / 6e-74 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.017G071400 [exp] 250 / 3e-72 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G007900 [exp] 246 / 5e-72 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0221 [flax] [poplar] RRM PF08152 [flax] [poplar] GUCT GUCT (NUC152) domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10001057 pacid=23178113 polypeptide=Lus10001057 locus=Lus10001057.g ID=Lus10001057.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCATCTGGTATCGGCGTTGCTTGTATATTCCATACGCCATCCAGTGAACTCGGTACTAGAAGGGCAACTACTCCCCCTATCACTTCCTCTT GTCTGTTCCCTCTTACAATTCCGGATAAACCTTCCATCAGTTCGTTGTTTGCTAAAGGCCGTGGGAGTGGCGGAGGAGGAGCAGGGAGACCCACCTTCCT TCTTGTCGAGGGAGGTTTTCGCCGGCATACTACTACTCCTGTTTCTTCTTCCATAGCTTCTTCCAATTCCCTTCTCACTGAACAGGCCTTCAACGGCCTA GGTGATTTCTCTGATTTCGACGGTGTTGACAGTGATGATGATTTGGCAAATGAGCCAGCTATTGGAACTTCTGGAACTGATGAAATTGACATTCGCAAGT TGGGTCTGCCTGCTCGTCTGGTTGAATCGCTGGAGAAACGTGGAATTACTAACCTTTTCCCAATTCAAAGAGCTGTTCTGATTCCAGCACTGGAAGGTCG AGATATCATTGCTCGTGCAAAGACTGGGACTGGGAAGACTTTGGCATTTGGGATTCCAATAATTAAGCTCATCACCGAAGACACTGAACAAAAAGGCCTA CAAAGGCGAACTGGGCGGCTTCCACGAGTTTTGGTCCTAGCACCTACTCGGGAATTAGCAAAGCAAGTAGAGAAAGAAATTAAAGAGTCTGCACCGTACC TTAACAGTGTCTGTGTTTATGGAGGTGTTTCATATGTCACACAACAAAGTGCTCTTTCCCGTGGAGTTGATGTTGTGGTTGGGACTCCAGGTCGAATCAT TGATCTCATAAAAGGGAACAGTCTGAAACTGGGGGAGGTTCAGTACTTGGTCCTTGATGAAGCTGACCAAATGCTTTCATTTGGATTTGAAGAGGACGTG GAAGTAATCTTAGAAAATCTTCCACCAAAGCGACAGAGTATGCTTTTCTCTGCAACTATGCCTACTTGGGTTAGGAAATTGGCCAGGAAGTATCTGGAGG ATCCGTTGCAAATTGATCTGGTTGGTGAGCAAGAAGAAAAGCTTGCTGAAGGAATTAAGCTGTATGCCGTATCTGCCACTGCCACTTCAAAGCGCAGTAT GCTTAGTGATCTTGTGACTGTATATGCTAAGGGAGGAAAAACTATAGTGTTTACCCAAACGAAAAGAGATGCAGATGAAGTCTCCATGGCATTAACGAAT AGCATAACGTCGGAGGCATTGCATGGAGATATTTCTCAGCATCAGAGAGAGAGAACCTTGAATGGTTTCCGCCAAGGAAAATTCACTGTTCTTGTAGCCA CTGATGTCGCATCTCGTGGACTTGACATTCCAAATGTCGATCTGGTTATTCACTATGAGCTACCAAATGATTCTGAGACTTTTGTACATCGTTCTGGTCG TACTGGGCGTGCAGGGAAGCAAGGAACTGCGATTTTGTTGTTCTCCAGCAGCCAAAGGAGAACCGTAAGATCTCTAGAGCGTGATGTGGGGTGTAAGTTT GAATTTGTGAGCCCACCAGCCATTGAAGAGATTCTAGAATCATCAGCCGAGCAGGTTATAGCTACACTACGTGGAGTTCATCCCGAATCTGCAGAGTACT TTATGGAAACTGCCCAGAAATTGTTAGAAGAACAAGGAACGAATGCGCTTGCATCAGCTCTGGCACATTTGAGTGGTTTCACGCAGCCTCCTTCATCCAG GTCTCTTATCAACCATGAGCAGGGTTGCGTAACATTGCAATTGACTAGGGACCCAAATTATGCCAGAGGCTTCCTGTCAGCTAGGTCGGTCACTGGTTTC CTGTCTGATGTATATCCTACACCAGCCGATGAAGTTGGGAAAGTATATCTAATTGCTGACGAAAAGGTTCAGGGAGCAGTGTTTGATCTATCAGAGGAGA TTGCAAAAGAGTTGCTAAATATGGAATTGCCCCCTGGTAATCGTATTTCCAAGATCACTAAGTTACCTGCATTGCAAGATGATGGGCCAGTTGCAGATAA TTATGGACGGTTTTCTAGTAGGGACCAATCTAGTAGGGGAGGTTCGGGAGGCTATAGAGCATCCAGGCGCGGAGGAGGTCGAAATTATGATAATGATGCG CGTGGCAGTCGTAGCCCTTTGAGGAGCAGTGGCAATAGTTGGTCGGCCATTAGAGGTCGATCAAGATATGAATCATCAAACAGAGACGGGTATGTTACAT AA
AA sequence Show only first row Show all	>Lus10001057 pacid=23178113 polypeptide=Lus10001057 locus=Lus10001057.g ID=Lus10001057.BGIv1.0 annot-version=v1.0 MAASSGIGVACIFHTPSSELGTRRATTPPITSSCLFPLTIPDKPSISSLFAKGRGSGGGGAGRPTFLLVEGGFRRHTTTPVSSSIASSNSLLTEQAFNGL GDFSDFDGVDSDDDLANEPAIGTSGTDEIDIRKLGLPARLVESLEKRGITNLFPIQRAVLIPALEGRDIIARAKTGTGKTLAFGIPIIKLITEDTEQKGL QRRTGRLPRVLVLAPTRELAKQVEKEIKESAPYLNSVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQYLVLDEADQMLSFGFEEDV EVILENLPPKRQSMLFSATMPTWVRKLARKYLEDPLQIDLVGEQEEKLAEGIKLYAVSATATSKRSMLSDLVTVYAKGGKTIVFTQTKRDADEVSMALTN SITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDSETFVHRSGRTGRAGKQGTAILLFSSSQRRTVRSLERDVGCKF EFVSPPAIEEILESSAEQVIATLRGVHPESAEYFMETAQKLLEEQGTNALASALAHLSGFTQPPSSRSLINHEQGCVTLQLTRDPNYARGFLSARSVTGF LSDVYPTPADEVGKVYLIADEKVQGAVFDLSEEIAKELLNMELPPGNRISKITKLPALQDDGPVADNYGRFSSRDQSSRGGSGGYRASRRGGGRNYDNDA RGSRSPLRSSGNSWSAIRGRSRYESSNRDGYVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	0	1
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	1.0	0.9914
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	2.0	0.9752
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005031 [exp]	2.8	0.9719
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	3.0	0.9720
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10013801 [exp]	4.0	0.9557
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	4.5	0.9609
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	4.6	0.9564
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042231 [exp]	4.9	0.9515
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	5.2	0.9547
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	5.5	0.9585

Compare expression of checked genes

Lus10001057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.