Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24130 277 / 2e-92 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039333 [exp] 326 / 2e-113 AT5G24130 193 / 1e-61 unknown protein Lus10039332 [exp] 135 / 1e-39 AT5G24130 108 / 5e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G021100 [exp] 323 / 8e-111 AT5G24130 310 / 1e-105 unknown protein Potri.015G021400 [exp] 317 / 5e-108 AT5G24130 308 / 6e-105 unknown protein Potri.012G031000 [exp] 303 / 9e-103 AT5G24130 306 / 4e-104 unknown protein Potri.015G021300 [exp] 207 / 2e-66 AT5G24130 205 / 6e-66 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001061 pacid=23141283 polypeptide=Lus10001061 locus=Lus10001061.g ID=Lus10001061.BGIv1.0 annot-version=v1.0 ATGGGGAAGCTGGCGTCGGCGAGGGAGCACAGGATGTACGGCCCGAGGCTGAGCCGGAACCGAGCCGAATACGTCAACGCGGGGCTATACCTATTCGCCA CCATCGTGCTCGTCTCCGGGTTCGCGGCCCAGTTCTCGAGGGAGCCCAGGTCGGGTCTGGTGCTGTTGTTGATCGCCCTGCTGATCGTCGTGGCGGTCAG CGTCCACGACATGGTGGCCCACCTGGCCGGTATCGACTACCGCCTTTCGAGTCTCATGGTGTTCGACCCGCAGCTGGGGCTTGTTGAGTTTGCGGTCCCG CTGGTCCTCGCTGCCGGTGCCTTGCTCTGGTTCCTCGCCGTCCTTTTCCTCTTCCTGCAGGCACTACGTACTTATGCTAGTCTCACTGTTTCCGACCCAA TTGATACGGTGCAGGAAGAGAAAGGATACGGGTTCGAGAGGATGGAACGACATGCTCTGAACATGGTGTTAGCTGGTGCGGCACTTTGGTTACTCGGTTC GATCCACAATGTCTGCCAAATCTACGAGAGGGCTGATGCTCACGTTCAGATTTTGCAGCACACTGTTCAGCTTCCCTTCTTAATGGGGAGCTTGCTTTTC TTGGTTGGTGCCATCATCAACATTGGAGAGCAATCCAAATGGGACAACCACGGCCTTCATTTACTGGGGACAACTCTGTTATGGATGTCGATATACGGGA GCCTGATGTTCTTCATGGGAGGGTTGGCGAACGTGGTGAAGGTGTTCAAGATGCAGCAAATGAACGGGCTGCGACTTGAGAAACTGAGGGGCGGGGCCAA TGAGCGGCTGATTCACGGAAGGGAAGGTCACGTGCCACTGATCACTGAAGAGCAGAGGCGGCGGTCTATGAGGTTGTCTGTAACTGATCAGGAACAACCA CCGGCAGGTGGTGGCAAGGGTACAGTACTGGCGACGCCTTATAAAGATGTTCTTCTTGGACAGCAGCAGCATTAA
AA sequence Show only first row Show all	>Lus10001061 pacid=23141283 polypeptide=Lus10001061 locus=Lus10001061.g ID=Lus10001061.BGIv1.0 annot-version=v1.0 MGKLASAREHRMYGPRLSRNRAEYVNAGLYLFATIVLVSGFAAQFSREPRSGLVLLLIALLIVVAVSVHDMVAHLAGIDYRLSSLMVFDPQLGLVEFAVP LVLAAGALLWFLAVLFLFLQALRTYASLTVSDPIDTVQEEKGYGFERMERHALNMVLAGAALWLLGSIHNVCQIYERADAHVQILQHTVQLPFLMGSLLF LVGAIINIGEQSKWDNHGLHLLGTTLLWMSIYGSLMFFMGGLANVVKVFKMQQMNGLRLEKLRGGANERLIHGREGHVPLITEEQRRRSMRLSVTDQEQP PAGGGKGTVLATPYKDVLLGQQQH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24130			unknown protein		Lus10001061 [exp]	0	1
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	1.0	0.9947
AT5G12460			Protein of unknown function (D...		Lus10009957 [exp]	4.0	0.7285
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	4.0	0.8848
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10034320 [exp]	4.1	0.7267
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	4.9	0.8848
AT1G70780			unknown protein		Lus10039287 [exp]	5.7	0.8848
					Lus10027606 [exp]	6.3	0.8694
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	6.9	0.8576
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10035423 [exp]	6.9	0.7406
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	8.5	0.7989

Compare expression of checked genes

Lus10001061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.