Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11070 149 / 5e-42 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT5G24110 148 / 8e-42 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT4G23810 140 / 2e-38 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT3G56400 107 / 9e-27 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G46400 102 / 8e-25 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT2G40750 93 / 5e-21 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT2G40740 91 / 8e-21 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT5G45260 85 / 1e-17 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G29860 79 / 2e-16 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT1G66600 76 / 7e-16 WRKY ABO3, ATWRKY63, WRKY63 WRKY DNA-binding protein 63, ABA overly sensitive mutant 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039331 [exp] 464 / 2e-164 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2) Lus10032372 [exp] 159 / 1e-45 AT4G11070 234 / 4e-75 WRKY family transcription factor (.1.2) Lus10023099 [exp] 150 / 5e-42 AT4G11070 235 / 3e-75 WRKY family transcription factor (.1.2) Lus10001902 [exp] 135 / 6e-37 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10003894 [exp] 125 / 5e-33 AT4G11070 196 / 1e-60 WRKY family transcription factor (.1.2) Lus10029022 [exp] 102 / 3e-25 AT2G40740 157 / 8e-47 WRKY DNA-binding protein 55 (.1.2) Lus10012870 [exp] 93 / 3e-21 AT3G56400 153 / 1e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10030517 [exp] 87 / 3e-19 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029021 [exp] 84 / 3e-18 AT3G56400 149 / 3e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G031700 [exp] 220 / 8e-69 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.002G168700 [exp] 182 / 3e-54 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.003G138600 [exp] 178 / 4e-53 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.014G096200 [exp] 171 / 4e-50 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.001G092900 [exp] 169 / 1e-49 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.013G090400 [exp] 103 / 9e-25 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.019G059300 [exp] 99 / 3e-23 AT2G40740 168 / 2e-49 WRKY DNA-binding protein 55 (.1.2) Potri.006G109100 [exp] 97 / 8e-23 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 86 / 8e-19 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090300 [exp] 84 / 7e-18 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10001062 pacid=23141281 polypeptide=Lus10001062 locus=Lus10001062.g ID=Lus10001062.BGIv1.0 annot-version=v1.0 ATGAACACTCATCCTCGGACCACCGCTTCGTCGGATGATGATGACTGGGAGCAGAAGTGCAGTAGTCTGGCGGCTGAGCTGGCATCCGGGAGGGACGTGG CCAAGCAGCTCCAGCTCATCCTCTTCCCGCCGTCCAGTCATTATCACGACGTCACTCGGGAAATGCTGGTGAAGAAGATCCTGGTTTCCTACGACAACGC GCTCTTCCTGCTTAACCAGCAAAACCCGAACCGGATGGTTCAGATTAAGTCGGAGTATTCGCCACCCCCGCCGCCGTCAATGAATGGGAGTCCTATGAGT GAGGACTCTGACCGTGACTGCTCGCCGGATGTCAACGTGGTCAATCCGACGACTGGTTCCACCTCTAGGAAAAGGAAGAGCAGTATTCCAAGGTGGACGC ATCAAGTGAAAGTGAGGCCAGGGATGGGACTGGAAGGTCCACTTGATGATGGTTTCAGCTGGAGGAAATACGGCCAAAAGGACATCCTTGGTGCCAAATA CCCACGAGGGTATTACAGGTGCACACTAAGGAACGTGCAAGGATGCCTGGCCACAAAACAAGTCCAAAGGTCCGACCAAGACCCTTCCATTCTCGAGATT ACCTACAGGGGAAGGCACACCTGCTCCGCCCATTCATCATCCCCTCCGCTGCCATCAACCACCGTGGCAGATAACCACGACCATCTCCTCCTGAATTTCC AGACGGGACTCAAGGTCATAACCGACGACTTGGAGTTGACCAACAACTACTCTTCAGCCCCATTGCCACCTTCTAACTTTGCCAGCTTCTTTCCTCCGCC GCCTTTTACCGCGGCCGGGAGCTTCTTCCCTTCTCCGGCGACCAGCAGCTTTGTCCCTCCTCCGCCGACAAGCAGTACCGTTTACAACCACGTGGGTTTG GGTCCAGCTGCTTCTTCTTCGGGTAACTCTACTACGACAAGCTCGGCCGCGACGGTTGGATTGGCTGATCATGACTATCCGTTTGGGAACATGGATTTGT TTGATAGTTATCCGACAACAACCTACGGATTCGACAACTCCGGCTTCTTTTCTTAG
AA sequence Show only first row Show all	>Lus10001062 pacid=23141281 polypeptide=Lus10001062 locus=Lus10001062.g ID=Lus10001062.BGIv1.0 annot-version=v1.0 MNTHPRTTASSDDDDWEQKCSSLAAELASGRDVAKQLQLILFPPSSHYHDVTREMLVKKILVSYDNALFLLNQQNPNRMVQIKSEYSPPPPPSMNGSPMS EDSDRDCSPDVNVVNPTTGSTSRKRKSSIPRWTHQVKVRPGMGLEGPLDDGFSWRKYGQKDILGAKYPRGYYRCTLRNVQGCLATKQVQRSDQDPSILEI TYRGRHTCSAHSSSPPLPSTTVADNHDHLLLNFQTGLKVITDDLELTNNYSSAPLPPSNFASFFPPPPFTAAGSFFPSPATSSFVPPPPTSSTVYNHVGL GPAASSSGNSTTTSSAATVGLADHDYPFGNMDLFDSYPTTTYGFDNSGFFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001062 [exp]	0	1
AT5G55690	MADS		MADS-box transcription factor ...		Lus10007371 [exp]	3.5	0.9137
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10039331 [exp]	7.5	0.8610
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	19.4	0.9003
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015209 [exp]	26.5	0.8839
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030659 [exp]	33.2	0.8413
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10027648 [exp]	33.5	0.8415
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10017898 [exp]	33.8	0.8205
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031473 [exp]	41.2	0.8472
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	49.4	0.8354
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	51.0	0.8373

Compare expression of checked genes

Lus10001062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.