Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47980 69 / 2e-14 HXXXD-type acyl-transferase family protein (.1) AT4G15400 69 / 4e-14 HXXXD-type acyl-transferase family protein (.1) AT1G24430 66 / 4e-13 HXXXD-type acyl-transferase family protein (.1) AT3G26040 65 / 6e-13 HXXXD-type acyl-transferase family protein (.1) AT1G24420 61 / 2e-11 HXXXD-type acyl-transferase family protein (.1) AT5G23970 54 / 4e-09 HXXXD-type acyl-transferase family protein (.1) AT5G47950 53 / 8e-09 HXXXD-type acyl-transferase family protein (.1) AT3G30280 50 / 8e-08 HXXXD-type acyl-transferase family protein (.1) AT4G15390 43 / 3e-05 HXXXD-type acyl-transferase family protein (.1) AT3G29590 40 / 0.0004 AT5MAT HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025522 [exp] 201 / 4e-63 AT3G26040 236 / 9e-73 HXXXD-type acyl-transferase family protein (.1) Lus10026736 [exp] 125 / 3e-35 AT3G26040 129 / 7e-34 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 105 / 3e-27 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 81 / 2e-18 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 80 / 4e-18 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10036078 [exp] 71 / 7e-15 AT3G26040 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 67 / 2e-13 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 64 / 2e-12 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10040354 [exp] 59 / 2e-10 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 87 / 1e-20 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 78 / 3e-17 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 76 / 8e-17 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 71 / 7e-15 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 67 / 2e-13 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.005G028200 [exp] 66 / 3e-13 AT3G26040 232 / 1e-71 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 64 / 1e-12 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 64 / 1e-12 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 64 / 1e-12 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 64 / 2e-12 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10001063 pacid=23141287 polypeptide=Lus10001063 locus=Lus10001063.g ID=Lus10001063.BGIv1.0 annot-version=v1.0 ATGTTCGGCAACCTGATAATGAGAGCATGTTTCTCTCTCCAAGGAACTATCGTCGAGCTGGATGAACTGGTGAGTCTGATGAAAAAATCGGTGTCGAAAT TCGACGGCGAGTTGATGAAGGAAGTACGAGGGAATGAAGGGAAGGACCGTTTCGTGGAGTTGGGTAAAGAGATGCACGAACAAGAAGGGGATGCGGATAG GCACATTATGTGCAATAGCTTTAGCCGGTTGGGTTATTACGACATTGATTTCGGATGGGGTAAACCGGTTTGGTTGGGTTGCATTTGCGCCGATGAGTCG GTTCCGGTGATGGTTAATACTGTTGTGGTGAATGATACGAGGAGTGGCGAAGGATTGGAAGTTTGGGTTTGTATTGGCAAGGATGACATGGCGGTTGTGG AGAATGCCGAGGAGCTACTCTCCTTTGTCTCGGCGATTGATCCAAGTCCTCTTGATTTGCCTTGA
AA sequence Show only first row Show all	>Lus10001063 pacid=23141287 polypeptide=Lus10001063 locus=Lus10001063.g ID=Lus10001063.BGIv1.0 annot-version=v1.0 MFGNLIMRACFSLQGTIVELDELVSLMKKSVSKFDGELMKEVRGNEGKDRFVELGKEMHEQEGDADRHIMCNSFSRLGYYDIDFGWGKPVWLGCICADES VPVMVNTVVVNDTRSGEGLEVWVCIGKDDMAVVENAEELLSFVSAIDPSPLDLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47980			HXXXD-type acyl-transferase fa...		Lus10001063 [exp]	0	1

Compare expression of checked genes

Lus10001063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.