Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 89 / 3e-21 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 88 / 4e-21 HXXXD-type acyl-transferase family protein (.1) AT3G48720 79 / 4e-18 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G17540 66 / 2e-13 HXXXD-type acyl-transferase family protein (.1) AT5G57840 57 / 2e-10 HXXXD-type acyl-transferase family protein (.1) AT3G03480 57 / 3e-10 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G07080 45 / 4e-06 HXXXD-type acyl-transferase family protein (.1) AT3G62160 44 / 7e-06 HXXXD-type acyl-transferase family protein (.1) AT1G27620 43 / 2e-05 HXXXD-type acyl-transferase family protein (.1) AT2G19070 42 / 7e-05 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039329 [exp] 195 / 2e-61 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 158 / 2e-47 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 100 / 2e-25 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 99 / 1e-24 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 96 / 4e-24 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 92 / 2e-22 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 92 / 2e-22 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 88 / 4e-21 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 80 / 3e-18 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100800 [exp] 111 / 1e-29 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 110 / 2e-29 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 74 / 4e-16 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 65 / 4e-13 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.019G003000 [exp] 61 / 2e-11 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 61 / 2e-11 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 60 / 3e-11 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 59 / 7e-11 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 57 / 3e-10 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 57 / 3e-10 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10001064 pacid=23141288 polypeptide=Lus10001064 locus=Lus10001064.g ID=Lus10001064.BGIv1.0 annot-version=v1.0 ATGGTTGATTCTACTACCAAAGTAGTTGACCAGCAGCTAACAGTAAAGCTGAACGGGAAACCATTGCTGATCCCCGCGGCTGAAAATACACCAAAGGGTA TGCATTTCCTCTCTAACCTTGATTACTGTGACATGTTTATTTACATCTTCTTCCCTTACAAGTCAACCGCCAAAGGAAACGAGAATGCCGCCCGAATTCT AAGGAATGCGTTGAACAAGGTCCTTGTTTATTACTACCCTCCCGCCGGCCGGCTTACCGTTGGCGAGCACGATAAGCCGGCCGAACATTGCACCGGCGAC CGTGCCATTTTTGTCGACACAGATGCAGATTGTGAATTGGGGAACGTTGATCTCTCCGATCCGGACCACGCTACTCGTTCTAAGTTGGGTGTACAAGATT CCTGGTGCCCGGAGCGCACTTGA
AA sequence Show only first row Show all	>Lus10001064 pacid=23141288 polypeptide=Lus10001064 locus=Lus10001064.g ID=Lus10001064.BGIv1.0 annot-version=v1.0 MVDSTTKVVDQQLTVKLNGKPLLIPAAENTPKGMHFLSNLDYCDMFIYIFFPYKSTAKGNENAARILRNALNKVLVYYYPPAGRLTVGEHDKPAEHCTGD RAIFVDTDADCELGNVDLSDPDHATRSKLGVQDSWCPERT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63560			HXXXD-type acyl-transferase fa...		Lus10001064 [exp]	0	1

Compare expression of checked genes

Lus10001064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.