Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 126 / 6e-35 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 110 / 8e-29 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 106 / 1e-27 HXXXD-type acyl-transferase family protein (.1) AT5G48930 77 / 6e-17 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 69 / 6e-14 HXXXD-type acyl-transferase family protein (.1) AT2G40230 68 / 9e-14 HXXXD-type acyl-transferase family protein (.1) AT1G65450 59 / 1e-10 HXXXD-type acyl-transferase family protein (.1.2.3) AT2G19070 59 / 2e-10 SHT spermidine hydroxycinnamoyl transferase (.1) AT2G39980 56 / 2e-09 HXXXD-type acyl-transferase family protein (.1) AT5G01210 52 / 4e-08 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039329 [exp] 272 / 7e-91 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 243 / 8e-80 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10026737 [exp] 228 / 1e-75 AT5G41040 249 / 3e-80 HXXXD-type acyl-transferase family protein (.1.2) Lus10035188 [exp] 136 / 1e-39 AT5G41040 313 / 3e-105 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 132 / 7e-37 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 130 / 2e-36 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 131 / 5e-36 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 129 / 9e-36 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 127 / 3e-35 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326300 [exp] 135 / 3e-38 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 128 / 7e-36 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 125 / 2e-34 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 98 / 3e-24 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.005G230900 [exp] 74 / 1e-15 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G165200 [exp] 71 / 7e-15 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.010G186300 [exp] 71 / 1e-14 AT2G40230 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.018G109900 [exp] 70 / 2e-14 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 69 / 4e-14 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.002G032200 [exp] 68 / 8e-14 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10001065 pacid=23141280 polypeptide=Lus10001065 locus=Lus10001065.g ID=Lus10001065.BGIv1.0 annot-version=v1.0 ATGGTCCCCGAGCAAGAAACACGAATCATGTTGGTCATGGACGTGCGAGATAGGGTGAGCCCGAAGTTTCCCAAAGGGTATTTTGGTAATGCGGTTAAAA TGATGACAGCCAGCACGTGGCAGACACGCGATATTATGGATAAACCACTTTGTTACGCCGTCAAGAAGATCCAAGACGGAATTGAGGGGTGTTGTGACGG GATCGTAAGGTCAACCATAGACTATATTGAAGCAACCAGAGCAACAAGGCCTTTGGGGTATACCATGATAGCAACAGCATGGTATAAGCTACCGACATAT TCTATTGACTTTGGATGGGTTCGACCGTTGGCATTCAAACCGGTTGAATCACCTCAGTATGAATCGGTTACTTTTCTGGCTCATGATAAGGAGATGAAGA GCATAAATGCGTTCATTGGCCTGCCGGCTTCTTCAAAGAATTGGTGCACAGATGCAATGTTGATTATCAATCTCATGAATTGGTTTCTAATTATGGCCTC AGTAAATTTATAA
AA sequence Show only first row Show all	>Lus10001065 pacid=23141280 polypeptide=Lus10001065 locus=Lus10001065.g ID=Lus10001065.BGIv1.0 annot-version=v1.0 MVPEQETRIMLVMDVRDRVSPKFPKGYFGNAVKMMTASTWQTRDIMDKPLCYAVKKIQDGIEGCCDGIVRSTIDYIEATRATRPLGYTMIATAWYKLPTY SIDFGWVRPLAFKPVESPQYESVTFLAHDKEMKSINAFIGLPASSKNWCTDAMLIINLMNWFLIMASVNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10001065 [exp]	0	1
AT2G04865			Aminotransferase-like, plant m...		Lus10032799 [exp]	1.4	0.9693
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10004408 [exp]	4.7	0.8190
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011315 [exp]	4.9	0.8812
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	5.3	0.9207
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	6.5	0.9207
					Lus10000400 [exp]	7.5	0.9207
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	8.4	0.9207
					Lus10009372 [exp]	9.2	0.9207
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	9.9	0.9207
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	10.6	0.9207

Compare expression of checked genes

Lus10001065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.