Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06120 154 / 3e-45 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 141 / 1e-38 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 99 / 3e-23 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G24140 100 / 4e-23 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 95 / 4e-22 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46810 93 / 4e-21 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 92 / 5e-21 bHLH bHLH071 beta HLH protein 71 (.1) AT1G72210 92 / 5e-21 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 92 / 6e-21 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G65320 80 / 1e-16 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039328 [exp] 375 / 9e-130 AT5G53210 257 / 3e-83 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014938 [exp] 137 / 5e-38 AT5G53210 264 / 2e-87 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038823 [exp] 125 / 2e-31 AT5G24120 547 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Lus10007139 [exp] 102 / 5e-24 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 101 / 1e-23 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 95 / 5e-23 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034031 [exp] 96 / 7e-23 AT3G06120 225 / 8e-75 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015902 [exp] 97 / 4e-22 AT1G72210 235 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010503 [exp] 94 / 6e-22 AT3G06120 191 / 4e-61 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022300 [exp] 208 / 3e-64 AT5G53210 152 / 1e-42 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G202900 [exp] 175 / 1e-53 AT3G06120 250 / 5e-85 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G031800 [exp] 143 / 2e-39 AT5G53210 303 / 2e-101 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 99 / 7e-23 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 98 / 1e-22 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G141100 [exp] 96 / 3e-22 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1) Potri.003G093200 [exp] 94 / 9e-22 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.002G180300 [exp] 95 / 1e-21 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 94 / 1e-21 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G025900 [exp] 94 / 1e-21 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10001066 pacid=23141286 polypeptide=Lus10001066 locus=Lus10001066.g ID=Lus10001066.BGIv1.0 annot-version=v1.0 ATGGCCGACAGCTTGTTGTCCGGTTTCCTTCAGGATTCCGGATTTGGCAACAACAACAACAACAGCTTTCTCGATGGTGGTAATGATCTCTTTTCCATCT TTGACTCCTTTCACCACGTCACCACCGCCACCACTGCCTTCCCTCCTCCTCCTGCCACCACTACCTTCCGACGGAAAGCAGAAGATACCATCCCTCCCAC GTCTGCTTCTAAAGGTGTCTTGGAGACGGAACCTAAGACCAAGCGGCAAAAGACGACTAGTACCACGACCAATCATCAAGAGGAGGCAGCTAACCCTGAC GAGGATGGCCTGTTTGGCGGCGGAAGTGGTCGGGTGTCTCACATCACGGTGGAGCGTAACCGCCGGAAGCAGATGAACGGCCACTTGTCCCTCCTCAGGT CTCTCATGCCTTCCTTCTATGTCAAACGAGGAGACCAAGCATCAATAATAGGAGGAGTAGTGGACTACATCAAAGAGCTACAACAAGTCCTCCAATCTCT AGAAGCCACGAAGCAACGCAAGGCCTATACCGAAGTCCTCTTAAGCCCAAGGCTAATCCCCAGTCCCAGGCCCATCCATTTGCCACCTATAAGCCCACGG ACCCCTCAAACACCCAACAGCCCCTACAAGCATATTACGACGTCGTTGCTCCAACAGCAGCAACAACATCAAATGTTCCCTGCTGCTGCTGCTGCTGCTA CTAGTAGTAATTTTCTTCCTTCTCCGACCACTTCATCGTCATCTTCGTCGAATAATATCATCCTTAACGACGTCGATAATACCATCAACGACCTGGTCGC AAAATCCAAGTCGTCGGTTGCTGACGTGGAGGTGAAATTCTCAGGCCCGAACCTCGTGGTGAAGACGGTCTACTCTTCCAGGATTCCTGGACAGGTTGTT AAGATCATCTCAGCTCTTGAGGACATGTGTCTCGAGATTCTCCACGTCAGCATTAACGGTGTGGAGGATACCATGCATAACTCCTTCACCATTAAGATCG GAATTGAGTGCCAACTAAGTGCAGAAGAGCTAGCTCAACAAATCCAACACACATTCTGCTGA
AA sequence Show only first row Show all	>Lus10001066 pacid=23141286 polypeptide=Lus10001066 locus=Lus10001066.g ID=Lus10001066.BGIv1.0 annot-version=v1.0 MADSLLSGFLQDSGFGNNNNNSFLDGGNDLFSIFDSFHHVTTATTAFPPPPATTTFRRKAEDTIPPTSASKGVLETEPKTKRQKTTSTTTNHQEEAANPD EDGLFGGGSGRVSHITVERNRRKQMNGHLSLLRSLMPSFYVKRGDQASIIGGVVDYIKELQQVLQSLEATKQRKAYTEVLLSPRLIPSPRPIHLPPISPR TPQTPNSPYKHITTSLLQQQQQHQMFPAAAAAATSSNFLPSPTTSSSSSSNNIILNDVDNTINDLVAKSKSSVADVEVKFSGPNLVVKTVYSSRIPGQVV KIISALEDMCLEILHVSINGVEDTMHNSFTIKIGIECQLSAEELAQQIQHTFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10001066 [exp]	0	1
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10039328 [exp]	3.2	0.8916
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011472 [exp]	4.0	0.8949
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Lus10005451 [exp]	6.9	0.8901
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	8.5	0.8788
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	9.5	0.8788
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	10.4	0.8788
					Lus10006808 [exp]	10.6	0.8663
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10003624 [exp]	11.2	0.8090
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	11.2	0.8788
					Lus10033149 [exp]	12.0	0.8788

Compare expression of checked genes

Lus10001066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.