Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53220 159 / 6e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039327 [exp] 290 / 5e-96 ND / Lus10039326 [exp] 259 / 5e-84 AT5G53220 165 / 1e-49 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022500 [exp] 175 / 6e-48 AT5G53220 165 / 1e-45 unknown protein Potri.014G039200 [exp] 94 / 5e-20 AT5G53220 103 / 5e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001067 pacid=23141284 polypeptide=Lus10001067 locus=Lus10001067.g ID=Lus10001067.BGIv1.0 annot-version=v1.0 ATGGTAAAGAACGAGGATGATGCGGAATTCGTAGTGCCTAAGTGCCAAGCTCCGGAGGATAGTATACCAAAATCGAGGTACCATGAATTGCAAGAGAGCA TAAAGAAATCTGAAGGAAGAATTGCAGAATTGGAAGCTGAGATTGCAACCTTGAAAAGTGAGTATGACGAGCTCAAGGTGAAGTATAAGGCACTAGAACT TGAAAAGGTAAGGGAAGCGGGAAAGGAAGTACAGGGTACTGTTGTCGATTTAACGGAGATGGAATTGGAGATTCACGATTCAGACCACGAGCTGTTTCAG CTCAAGGCTGAGAACATTACCCTGGAACATGAGAAGAAGAAGGCTGAAAATGATGCCCAAATTTGGAAACAAATGTACCATGAATTGAAGTCATCCTTGG GAAGAAGTTTCGAGGAAAGGATGACTGCTGAAGTTGGAGCTACTCATGACATTTCAGTGGCAGGAACACCAGGTAGCAATCTTGGTCGATCGGGAGGCCT TGATAACAAAAAAGCCATAAGATCACTGTTTATTGAAGAAGAGAGAACTCCCACTGGGAAAATGGCTCCATCAACTCCGATGGATCACAAACCTTCATGT CCTGCCATCATAAATTTAGACGACAGTGATGACGACGAACCTGATGCCATTAAAGCCGACCAAGAGAAGGCAAAGATTGGCACTTTGGGAAGAATTATAG ACACTGAAAATGAGAAATCATCTGACTGCTGCTTGGAAGATGATATGGAAGTCGGTCTTGGTACTACACAACGCTCGTGTACTTCCAAAAGGAAGAGAGC TGCAAACATGGTTACTAGTGATAGTGAGAATGAGAGTGATGATGATGAAGATAATATTCCATTGTGCCAGTTGAAGGCAAAGCGCTTCAGCAAAGTAAGT TCCGATGCAAATGGGTCATCCAATTTGGAGAGCGGTGATGATGATACAAAAGAGTTAGTAACCCCTCGTCGAAGGCGTTTGAAGAGAATGAGTGAAGTTC CCACTACGAAGGATGATGTTGAAGAAATCAAATCGGAAGAAGAAGATGGTTCCGAGAGTTCAGGGGATGATAGCATGAAGGAATTTATCGTCGAGAGCTC TTCTGACGTGTCTGATGATGGTTCTGTTGGATTTCATGGAGACGATTCCATCGATTCAAGTGAAGAAGAAGGTGACTGCAACTCGGAGATGCACGGAATC TTGTCCAGGCTTCGAAGAACCAAGGATCAGAAGTTCAAGTGGAAGTTCGAAGGCGACATGCTTGCAGACTTTGGTAAAGATTCCGAACTGTGTATGAGAG CTGCTTGTGTCCTTTATCGACAACAAACTTCGGACGAACAAGTTTCGAAGGAAGCGTTACACCTTAATGGACGAGGATTCAACAAGTTCGATGCTCACAG GGGAACCGAGATCGGGAGGTTTCTCACCGGTGGTTCTGGTGATATGATTAAATCTGTTCAGGAATTGGAAGCATATGATCCCAATGGAGTGGACAAGTGC AGAGAGTTTGCTTTTAAATATGCAAAGCAACTGTTTCAGATCTATCAGAACGGAGAGGACCGTTTCTTTTCACCTTCCATAGACAAGAAGTAA
AA sequence Show only first row Show all	>Lus10001067 pacid=23141284 polypeptide=Lus10001067 locus=Lus10001067.g ID=Lus10001067.BGIv1.0 annot-version=v1.0 MVKNEDDAEFVVPKCQAPEDSIPKSRYHELQESIKKSEGRIAELEAEIATLKSEYDELKVKYKALELEKVREAGKEVQGTVVDLTEMELEIHDSDHELFQ LKAENITLEHEKKKAENDAQIWKQMYHELKSSLGRSFEERMTAEVGATHDISVAGTPGSNLGRSGGLDNKKAIRSLFIEEERTPTGKMAPSTPMDHKPSC PAIINLDDSDDDEPDAIKADQEKAKIGTLGRIIDTENEKSSDCCLEDDMEVGLGTTQRSCTSKRKRAANMVTSDSENESDDDEDNIPLCQLKAKRFSKVS SDANGSSNLESGDDDTKELVTPRRRRLKRMSEVPTTKDDVEEIKSEEEDGSESSGDDSMKEFIVESSSDVSDDGSVGFHGDDSIDSSEEEGDCNSEMHGI LSRLRRTKDQKFKWKFEGDMLADFGKDSELCMRAACVLYRQQTSDEQVSKEALHLNGRGFNKFDAHRGTEIGRFLTGGSGDMIKSVQELEAYDPNGVDKC REFAFKYAKQLFQIYQNGEDRFFSPSIDKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53220			unknown protein		Lus10001067 [exp]	0	1
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	2.2	0.9443
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	4.5	0.9293
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	6.3	0.9278
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10022018 [exp]	6.6	0.9287
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	9.8	0.9280
AT3G47160			RING/U-box superfamily protein...		Lus10001209 [exp]	11.0	0.9240
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10010126 [exp]	11.1	0.9123
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	13.4	0.9189
AT5G48340			unknown protein		Lus10036410 [exp]	14.1	0.9181
					Lus10006006 [exp]	14.4	0.9239

Compare expression of checked genes

Lus10001067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.