Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14760 142 / 3e-39 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G33880 139 / 4e-38 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT1G27740 131 / 4e-36 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT5G43175 127 / 6e-35 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G66470 74 / 1e-14 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT5G37800 74 / 2e-14 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) AT4G30980 65 / 9e-12 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT2G24260 64 / 4e-11 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT5G58010 61 / 3e-10 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT5G09750 56 / 7e-09 bHLH HEC3, bHLH043 HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004315 [exp] 444 / 6e-157 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10017634 [exp] 71 / 2e-13 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1) Lus10033592 [exp] 69 / 4e-13 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10021846 [exp] 65 / 2e-11 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10033488 [exp] 59 / 7e-10 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014726 [exp] 57 / 1e-09 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 59 / 2e-09 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002720 [exp] 58 / 3e-09 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 57 / 5e-09 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119200 [exp] 150 / 8e-42 AT4G33880 186 / 3e-55 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.014G017100 [exp] 142 / 5e-39 AT2G14760 179 / 2e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G089000 [exp] 140 / 1e-38 AT2G14760 173 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.001G294300 [exp] 140 / 2e-38 AT4G33880 164 / 2e-47 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.017G126800 [exp] 76 / 2e-15 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.004G088900 [exp] 72 / 6e-14 AT5G37800 199 / 7e-62 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.006G186600 [exp] 66 / 8e-12 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.018G109500 [exp] 66 / 1e-11 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 63 / 9e-11 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.005G060900 [exp] 59 / 5e-10 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10001068 pacid=23170181 polypeptide=Lus10001068 locus=Lus10001068.g ID=Lus10001068.BGIv1.0 annot-version=v1.0 ATGGAATTCTTGTCATCATTCCCTGATACAGAATTTGAGTTGGGCAGATACTTCTCAATGGATCACGACCAGGAGCAACAAGCTGATCATCACCATTTCT TCCTTTCTCAAGTTGGCCAGCAGCTTTCCTCGTTTCCTTCGGGAGACACTACTAGTACTGATGATCAGTACTATTGCAGCAGCTGGAATAATCTGATGAT GAATCACAGTCCTTCTAGCAATTGTAGCAGCAACAACAGTGCAGCAGCATTCGATCCTGCTGCTGCTGCTGTTACTAATTACTGCGGAGGTGATTATCAG AATTTCGATAGGTTCCTTCCCGACCATGAGGCTGCCATGAATTTTTGTGCCATGGAAGAAGAGAGGACAAGTGCATTTATGTTGGGTAATATTAATAATT CAGCAGAAACAGTACTTGATGTTGCTTCAATTGATTGTCAGCCGCTGAAGAGGAAGTTTAACACCCACCAATCATCTGAAGAAGAAATAGCCGCTAACCC ATCTGATAAGAAGAGACCTCGTGCTACTAAGGATAATAAAGGCATGAAGAGTAGTGGTAACGGTAATACGCAGTGGAAGAAGGATCAAAAGTGCATTAAT ATTGTTAATGTTAATGAAGAGGAAAGCAAGAATAATAATGTTGGCATCAACTGTGGACGTGAGGGGCAAAGCGCAAGCAGTTGCAATTCGGAAGAGGAGA ATGGACTGTCTCAGGAACAATATTCAAACAATAATATCAATGGAGATTCTTCCAACAAAGCTCAAAAGTCAAACAGAGCCAGTAGGGGATCCGCCACTGA CCCGCAGAGCCTCTACGCAAGAAAGAGAAGGGAGAGGATTAACGAGAGACTGAGGATCTTGCAGAATCTTGTACCCAATGGTACTAAAGTTGATATCAGT ACAATGCTTGAAGAGGCTGTTCATTATGTCAAGTTCCTGCAGATCCAGATTAAGCTACTAAGCTCTGATGACATGTGGATGTATGCACCAATTGCTTACA ACGGTGTGGATGTTGGCCTCAACGAGAAGTTCTCTAACCTTCTATGA
AA sequence Show only first row Show all	>Lus10001068 pacid=23170181 polypeptide=Lus10001068 locus=Lus10001068.g ID=Lus10001068.BGIv1.0 annot-version=v1.0 MEFLSSFPDTEFELGRYFSMDHDQEQQADHHHFFLSQVGQQLSSFPSGDTTSTDDQYYCSSWNNLMMNHSPSSNCSSNNSAAAFDPAAAAVTNYCGGDYQ NFDRFLPDHEAAMNFCAMEEERTSAFMLGNINNSAETVLDVASIDCQPLKRKFNTHQSSEEEIAANPSDKKRPRATKDNKGMKSSGNGNTQWKKDQKCIN IVNVNEEESKNNNVGINCGREGQSASSCNSEEENGLSQEQYSNNNINGDSSNKAQKSNRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDIS TMLEEAVHYVKFLQIQIKLLSSDDMWMYAPIAYNGVDVGLNEKFSNLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10001068 [exp]	0	1
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10013802 [exp]	1.0	0.8885
AT5G05340			Peroxidase superfamily protein...		Lus10025256 [exp]	2.2	0.8358
AT2G19050			GDSL-like Lipase/Acylhydrolase...		Lus10002771 [exp]	5.5	0.7970
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10017402 [exp]	6.9	0.8440
AT3G44590			60S acidic ribosomal protein f...		Lus10026714 [exp]	7.9	0.8663
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	8.5	0.8176
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	10.6	0.8410
AT5G05390		LAC12	laccase 12 (.1)		Lus10009841 [exp]	12.4	0.8245
AT3G49650			P-loop containing nucleoside t...		Lus10011579 [exp]	12.6	0.7220
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	12.6	0.8234

Compare expression of checked genes

Lus10001068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.