Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001069 pacid=23170183 polypeptide=Lus10001069 locus=Lus10001069.g ID=Lus10001069.BGIv1.0 annot-version=v1.0 ATGAATGAATATAAAAAGTTTGCGACAAAATTAGAAGTGATCTCTTTCGACAACTCCGCCTTCCCGTCGTTGGGTCTCAACCTATCGCTTTTCCTCCTGC AAGAATTGCAACCGCCGCGTCGGAGAGCAGATGAGAATGGAGGTCCCAGGTGTGATTTGGAGCACACCAGAACGGTGAATTTGAAACAGAATCTAAATCG GACCTGCACAGGCCTTGATGGGCGAGAGGAAGAGGAAGAGAATGGTATCGAACAGGCACCGGTAAAGGTCGAGGATGAGGAAACAGAGTCACCTCGATGG CCCGACGGCCAGATTGTCAAAGGTTCTTCTTCATACTCCGCAGCAACTCCGGAACACCCCTACCTATTCGTCCACTGCGATTTCCCTATTTCTAGCTTGC TTCTTCAGTTCCCCAACTCTAGCGTCACCGTCTTTAGTTAA
AA sequence Show only first row Show all	>Lus10001069 pacid=23170183 polypeptide=Lus10001069 locus=Lus10001069.g ID=Lus10001069.BGIv1.0 annot-version=v1.0 MNEYKKFATKLEVISFDNSAFPSLGLNLSLFLLQELQPPRRRADENGGPRCDLEHTRTVNLKQNLNRTCTGLDGREEEEENGIEQAPVKVEDEETESPRW PDGQIVKGSSSYSAATPEHPYLFVHCDFPISSLLLQFPNSSVTVFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001069 [exp]	0	1
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033172 [exp]	1.4	0.8814
AT1G52540			Protein kinase superfamily pro...		Lus10001323 [exp]	2.4	0.8569
					Lus10032002 [exp]	3.0	0.8505
AT1G63820			CCT motif family protein (.1)		Lus10032288 [exp]	10.6	0.5751
					Lus10016931 [exp]	11.5	0.7426
AT1G47710			Serine protease inhibitor (SER...		Lus10040926 [exp]	12.5	0.7339
					Lus10022511 [exp]	16.4	0.7112
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	17.3	0.7112
					Lus10005843 [exp]	18.2	0.7112
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	19.0	0.7112

Compare expression of checked genes

Lus10001069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.