Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55270 655 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 138 / 1e-36 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 125 / 4e-32 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G22040 126 / 1e-31 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61350 121 / 1e-30 SKIP4 SKP1 interacting partner 4 (.1) AT1G27420 112 / 2e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 109 / 2e-26 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 101 / 1e-23 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27150 92 / 4e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 91 / 8e-20 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019425 [exp] 839 / 0 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10030072 [exp] 215 / 4e-68 AT1G55270 139 / 4e-39 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10020960 [exp] 153 / 2e-41 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 152 / 2e-41 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 145 / 4e-39 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 144 / 3e-38 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10043282 [exp] 119 / 4e-33 AT1G55270 66 / 2e-14 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 127 / 2e-32 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10022061 [exp] 112 / 2e-27 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G217700 [exp] 693 / 0 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 682 / 0 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 160 / 5e-44 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 154 / 2e-42 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G170000 [exp] 150 / 2e-40 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G083200 [exp] 137 / 2e-36 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.013G104300 [exp] 132 / 2e-34 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 131 / 5e-34 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 125 / 3e-32 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 116 / 1e-28 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10001071 pacid=23149475 polypeptide=Lus10001071 locus=Lus10001071.g ID=Lus10001071.BGIv1.0 annot-version=v1.0 ATGGCCGATAGTTGGAGGATGCGAGGTGCTGAGAGGATAAATCAACCTCCTCTGGTTGACACAACAGCTTGCTTATGTAGAGTAGATGCAGGACTTAAAA CAGTGGCTGGTGCGAAAAAGTACGTCCCAGGAAGTAAGCTTTGTCTTCAACCAGATATAAGACCATCCATCCACCCAACTAGACAGAAGCCGTCTCGTGG TGATAGGAACAGAAACCAGTCCCCTTTGTTTCCTGGACTCCCTGATGATCTTGCCATTGCTTGCCTCATTCGTGTCCCGAGGGCTGAGCATCGAAAGCTT AGGCTAGTCTGCAAAAGATGGTACCGTCTTTTATCAGGCAATTTCTTTTACTCGCTTAGGAAGAATGTTGGACTTTCTGAAGAATGGATATATGTGATCA AGAGAGATCGAGATGGGAAAATCTCATGGCATGCTTTTGATCCCATATACCAGCTTTGGCATCCACTTCCTCCTGTACCAAAAGAATATTCTGAAGCCCT TGGTTTTGGTTCTGCTGTTCTCAGTGGTTGTAACCTCTACTTGTTTGGTGGCAAAGATCCTTTGAAAGGATCAATGAGAAGGGTTATCTTTTATAGTGCC AGAACCAATAAGTGGCACCGTGCCCCTGATATGCTCCGGCGTAGGCATTTCTTCGGTTCATGTGTTATAAACAATTGTTTGTATGTAGCCGGTGGAGAGA ATGAGGGTGTGCATCGTCCATTGAGATCGGCAGAAGTTTATGATCCCAATAAGAATAGATGGTCCCTTGTATCAGATATGAGCACAGCAATGGTGCCATT CATTGGTGTGGTCTATGAAGGAAAGTGGTACCTGAAAGGACTTGGAACTCACAGACAGGTTCTGAGTGAAGTCTATCAGCCAGAAACCGATAGCTGGTAT CCTGTTTATGGCGGTATGGTAGGGGGTTGGAGAAATCCTAGTGCTTCATTGAATGGAAATCTCTATGCATTGGACTGCAAAGATGGCTGCAAACTTAGAG TGTTCGGTGAAGCAACTGATTCCTGGAGCAAGCATATCGACAGCAAGTTACATCTAGGCAATTCGTGCGCGTTGGAAGCAGCTGCGCTGGTTCCACTCAA TGGAAAGTTGTGCATCATCAGAAACAACATGAGCATATCAGTAGTCGATGTCTCGAAATCTGAAGATCTTGTTGGGGAAGCTCCTGCTGAACATTTGTGG GAAACCCTTTCAGGGAGAGGACAGTTCAAGACTCTGGTCTCCAACCTCTGGTCGAGCCTGGCTGGAAGGAACCGCCTGAGAAGTCACATTGTTCACTGCC AGGTTCTGCAGGCATAA
AA sequence Show only first row Show all	>Lus10001071 pacid=23149475 polypeptide=Lus10001071 locus=Lus10001071.g ID=Lus10001071.BGIv1.0 annot-version=v1.0 MADSWRMRGAERINQPPLVDTTACLCRVDAGLKTVAGAKKYVPGSKLCLQPDIRPSIHPTRQKPSRGDRNRNQSPLFPGLPDDLAIACLIRVPRAEHRKL RLVCKRWYRLLSGNFFYSLRKNVGLSEEWIYVIKRDRDGKISWHAFDPIYQLWHPLPPVPKEYSEALGFGSAVLSGCNLYLFGGKDPLKGSMRRVIFYSA RTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENEGVHRPLRSAEVYDPNKNRWSLVSDMSTAMVPFIGVVYEGKWYLKGLGTHRQVLSEVYQPETDSWY PVYGGMVGGWRNPSASLNGNLYALDCKDGCKLRVFGEATDSWSKHIDSKLHLGNSCALEAAALVPLNGKLCIIRNNMSISVVDVSKSEDLVGEAPAEHLW ETLSGRGQFKTLVSNLWSSLAGRNRLRSHIVHCQVLQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55270			Galactose oxidase/kelch repeat...		Lus10001071 [exp]	0	1

Compare expression of checked genes

Lus10001071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.