Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25570 392 / 1e-138 binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030074 [exp] 543 / 0 AT2G25570 397 / 2e-140 binding (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G219400 [exp] 413 / 5e-147 AT2G25570 379 / 3e-133 binding (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08238 [flax] [poplar] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Lus10001073 pacid=23149480 polypeptide=Lus10001073 locus=Lus10001073.g ID=Lus10001073.BGIv1.0 annot-version=v1.0 ATGCTTGGACGATCCTCAAAAAATATCGTTGTCAATCTCTGCGCCCTTCGTTGTCTCCAATCCTATACTCCTCATAGGGAGCTCCACAGCAGGAACAAGA AGGCGATGGAATTCATAGCCAAAGGTTGGAACGCTTTGAAGGAAGTCGACCGAGTGATTGATTACTGCGAGCTCAATGACCATCGTCTCATTCCTCACCT AAGAACTGCCAAGGAAAATTTTGAGCTAGCTTTGGAGGCTGACAATTCCAATACTCATGCTAGATATTGGTTGTCTAAATTGCATTTGAAGTACCATGTT CCAGGTGCTTGTAAAGCTATAGGAGCTGCTTTGTTGGTAGAAGCTGCAGAGATGGGCGATGCAGATGCTCAATACGAATTGGGTTGTCGTTTGAGAGTGG AGAATGATTGGGTTCAGTCAGATCAACAAGCTTTCTATTATTTGGAGAAGGCCGTGGACCAGTTACATCCAGGAGCTTTATACCTCCTAGGTGCCGTATA CTTGACTGGGGATTGTATAAAGAAAGACGTTGCCTCAGCTCTGTGGTGTTTCCATCGAGCATCAGAGAAGGGACATGCTGGTGCAGCAATAGCATATGGA TCTTTACTTCTTAGAGGTGAACAAGTCCCGGAAGCAATTACAAAACTAGAGATGAAAAGAGGAGCCCACGGCAGGAAAGCAAAGACAGATGAAAGTTGCG CTGCTTGGACGAGGCATCCGGTAGAAATGGCGAAACAACAGTTTGAAGGAGCTGCAAAAGCAGGGTGTGATCTGGGGCTGAAATGGCTGCAGAGAGTAGA GGAAGCAGAGGAGCGTCTGGTTTCTGAAACTAGCAGCAGCTCAGAAGGTGGCGTTGTTCTCTCATCATAA
AA sequence Show only first row Show all	>Lus10001073 pacid=23149480 polypeptide=Lus10001073 locus=Lus10001073.g ID=Lus10001073.BGIv1.0 annot-version=v1.0 MLGRSSKNIVVNLCALRCLQSYTPHRELHSRNKKAMEFIAKGWNALKEVDRVIDYCELNDHRLIPHLRTAKENFELALEADNSNTHARYWLSKLHLKYHV PGACKAIGAALLVEAAEMGDADAQYELGCRLRVENDWVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCIKKDVASALWCFHRASEKGHAGAAIAYG SLLLRGEQVPEAITKLEMKRGAHGRKAKTDESCAAWTRHPVEMAKQQFEGAAKAGCDLGLKWLQRVEEAEERLVSETSSSSEGGVVLSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25570			binding (.1.2.3)		Lus10001073 [exp]	0	1
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10019286 [exp]	6.6	0.7962
AT3G58530			RNI-like superfamily protein (...		Lus10015980 [exp]	17.0	0.7422
					Lus10010369 [exp]	23.6	0.7291
AT5G11350			DNAse I-like superfamily prote...		Lus10008086 [exp]	26.6	0.7717
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10039455 [exp]	35.4	0.7264
AT3G47610			transcription regulators;zinc ...		Lus10024226 [exp]	36.5	0.7184
AT1G55170			unknown protein		Lus10041450 [exp]	47.4	0.7095
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10021351 [exp]	48.9	0.7322
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10037673 [exp]	51.5	0.7437
AT1G16430			Surfeit locus protein 5 subuni...		Lus10040343 [exp]	119.0	0.7062

Compare expression of checked genes

Lus10001073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.