Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58570 529 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 521 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT2G42520 519 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 309 / 2e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01540 305 / 1e-97 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 299 / 4e-95 DEAD box RNA helicase family protein (.1.2) AT1G55150 293 / 2e-94 DEA(D/H)-box RNA helicase family protein (.1) AT3G06480 287 / 2e-87 DEAD box RNA helicase family protein (.1) AT1G31970 269 / 7e-85 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT2G33730 267 / 3e-82 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030075 [exp] 729 / 0 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 534 / 0 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000848 [exp] 524 / 0 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 521 / 0 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 520 / 0 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 518 / 0 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029337 [exp] 445 / 6e-154 AT2G42520 728 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015978 [exp] 432 / 1e-150 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043334 [exp] 306 / 6e-98 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007900 [exp] 541 / 0 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 532 / 0 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 519 / 0 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 507 / 1e-176 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 301 / 2e-96 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 301 / 4e-96 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 293 / 2e-94 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 297 / 3e-93 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.019G130900 [exp] 291 / 7e-93 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 289 / 2e-92 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10001074 pacid=23149477 polypeptide=Lus10001074 locus=Lus10001074.g ID=Lus10001074.BGIv1.0 annot-version=v1.0 ATGGCGTGTGCTCAGACTGGGTCGGGCAAGACCGCTGCCTTCTGCTTCCCTATAATTTCCAAGGTTTTGAAGAACGGACTTCAGTCGGGTCATGGTGGGA CCCGAATGGCCCAGCCTTGTGCTCTTATATTGTCTCCTACCAGGGAATTGTCCTGTCAGATTCACGAGGAGGCCAAGAAGTTTGCTTACAAAACTGGTGT TAAGATCGTTGTTGTGTATGGAGGTGCACCTATTCAACAGCAGCTTCACAACTTGGATAAGGGTGTTGACATACTGGTTGCTACTCCTGGACGCTTGGTT GACATGATTGAAAGAGGAAGAGTGTCCCTGAAGACAATTAAGCACCTGGCTGTAGATGAAGCTGATAGGATGTTGGACATGGGATTTGAACCTCAGATTA GGAAGATTGTTCAGCAAATGGGGATGCCTTCGACTGGCGAAAGGCAGACTATGCTTTTCAGTGCTACATTCCCTGATGAGATTCAGCGACTTGCATCTGA TTTTTTGTCCAACTACATCTTTCTATCTGTTGGGAGAGTGGGCTCAAGCACTGGGTTGATTTCTCAAAAAGTGGAGCTAGTCCAAGATATGGATAAAAGA TCTTACGTCATGAAACTTCTCCGTGCCCGTAAAACAAGTGGCAAGAGTGAATTGACACTGGTGTTTACTGAAACAAAGAAAGGTGCTGATGCCCTTGAGG ACTACTTGTACAGGAATGGTTTTCCAGCAATAGCTATTCATGGTGACAAAGTGCAACCGGAGAGGGAGCGGGCATTGAGATCATTCAAATCAGGGGCAAC TCCAATTCTGGTAGCAACTGACGTTGCATCTCGAGGACTGGACATCCCCAACGTTTCCCATGTCATAAACTACGACATGCCAAAGGACATTGATGACTAT GTTCATAGGATTGGTCGAACTGGACGAGCTGGTAAGTCTGGACAAGCAACAGCATTCTTCAGCGAGAAGAACATGTCAATGGCAAAGCCGCTAATGGAGC TGATGAAAGAATCAAAGCAGGAGGTTCCTTCTTGGCTGAGTGAATATGCAGAAAGTGACAACTCTAGCTACAGCGGTGGTGGTGGGCGTTACAAAAGATA TGGGGGAGGTGGTAGCAGCCGACATGGTGGCTACGATGATTATCGCAATGATTATTCAAGCAACAGCAGCTTTGGCGGTTACAATACTGCTCCTTACTAT GACAGTAATAGTTATGCAGCAGCTTACAGTGTCCCTAATGCTGGTGGTGGTGGTGGCTATGGGACTGATGCAGTTGTAGCCTCTGGCTGGGATATGTAA
AA sequence Show only first row Show all	>Lus10001074 pacid=23149477 polypeptide=Lus10001074 locus=Lus10001074.g ID=Lus10001074.BGIv1.0 annot-version=v1.0 MACAQTGSGKTAAFCFPIISKVLKNGLQSGHGGTRMAQPCALILSPTRELSCQIHEEAKKFAYKTGVKIVVVYGGAPIQQQLHNLDKGVDILVATPGRLV DMIERGRVSLKTIKHLAVDEADRMLDMGFEPQIRKIVQQMGMPSTGERQTMLFSATFPDEIQRLASDFLSNYIFLSVGRVGSSTGLISQKVELVQDMDKR SYVMKLLRARKTSGKSELTLVFTETKKGADALEDYLYRNGFPAIAIHGDKVQPERERALRSFKSGATPILVATDVASRGLDIPNVSHVINYDMPKDIDDY VHRIGRTGRAGKSGQATAFFSEKNMSMAKPLMELMKESKQEVPSWLSEYAESDNSSYSGGGGRYKRYGGGGSSRHGGYDDYRNDYSSNSSFGGYNTAPYY DSNSYAAAYSVPNAGGGGGYGTDAVVASGWDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58570			P-loop containing nucleoside t...		Lus10001074 [exp]	0	1
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	1.4	0.8711
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10029028 [exp]	6.3	0.8279
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	9.5	0.8332
AT1G50660			unknown protein		Lus10021521 [exp]	9.5	0.8762
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Lus10003250 [exp]	11.4	0.8578
AT3G20240			Mitochondrial substrate carrie...		Lus10034806 [exp]	14.3	0.7791
AT3G52270			Transcription initiation facto...		Lus10040084 [exp]	16.9	0.8389
AT5G09995			unknown protein		Lus10016816 [exp]	20.0	0.8531
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022055 [exp]	23.1	0.8286
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	28.2	0.8534

Compare expression of checked genes

Lus10001074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.