Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15050 484 / 6e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 478 / 2e-167 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 448 / 3e-156 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 441 / 2e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G03520 429 / 2e-148 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 425 / 2e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 400 / 2e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 398 / 6e-137 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G37585 376 / 3e-128 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 332 / 5e-111 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030084 [exp] 744 / 0 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 489 / 6e-172 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 480 / 2e-168 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 430 / 9e-149 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 426 / 3e-147 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10033714 [exp] 420 / 1e-144 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031626 [exp] 409 / 2e-140 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025339 [exp] 383 / 1e-130 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020316 [exp] 378 / 2e-128 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G003300 [exp] 571 / 0 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 491 / 5e-173 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 467 / 3e-163 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 442 / 2e-153 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 429 / 2e-148 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G119600 [exp] 426 / 3e-147 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 422 / 2e-145 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 398 / 6e-136 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G066200 [exp] 392 / 1e-134 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 333 / 4e-111 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10001076 pacid=23149474 polypeptide=Lus10001076 locus=Lus10001076.g ID=Lus10001076.BGIv1.0 annot-version=v1.0 ATGGAAACTATCAACGGCAGCAAATTGCAGCAGCAGAAGAAGCAGCAGAAATGGTTCTTCCTACTCATTTCCTCCCTCTTCCTCTCCACTCTTTTAATCC TCCTCACACTAACCTTCTCCCCCACTACTTCCACCTCCACCAAGCTCCTCTTCCACTCCTACCGCCGCACCTGGTGGCAGAAATCCGGCGCCGGCGCCGG CGCTGATAGAAAGCTTCCGCTTTTTGCGGAATCCAAGCTCTCAAAGCCCGAGGCTTCAGCTGCGAAAGTACCTCGTCTTGCTTATCTGATATCTGGGTCT GCTGGGGATGGTGTTAATCTCAAGAGGGCACTCAAAGCTCTCTACCATCCTAGGAACCAGTACGTTGTGCATTTGGACTTGGAGGCTCCTTTGGAGGAGA GATTGGAGCTGATCAGGTGGGTCAAGGAAGGGGAGAAGGTTTTCCAGCAAGTTGGTAATGTGAGGGTTGTTGTTAGGTCGAATTTGGTGACCTATAGAGG ACCTACTATGTTCAGCAACACCCTCCATGCTGCTTCTATTTTGTTGAGGGATGGCGGCGAATGGGATTGGTTCATCAATTTGAGTGCCTCTGATTACCCT TTGCTTACTCAAGATGATTTACTTTACACTTTGTCTTCCATCCCAAGGGACCTCAACTTTATTGAGCATACCAGTGACATTGGTTGGAAGGAAGATCAGC GAGCTAGGCCGGTTATAATCGATCCCGGGCTATACAGCCTGCAAAAATCCGATGTTTTCTGGGTTACAGAAAGAAGGAGTGTCCCTTCTGCATATAGACT CTTTACAGGTTCGGCTTGGATGATGCTTTCTCGTCCTTTCATCGAATACTGTCTGTGGGGATGGGACAATCTCCCAAGGATAGTTCTAATGTACTACACA AACTTCCTGTCTTCACCTGAAGGCTACTTCCACACAGTGATATGCAATGCTGACGAGTTCCGGAATACTACTGTTAACCACGACCTCCATTTCATTTCTT GGGATAACCCTCCTAAGCAACACCCTCATTTTCTCACTTTGGATGACTATCAGAGCATGGTTGACAGCAATGCACCCTTTGCTAGGAAGTTTGGCAGGAA CGATCCTGTTCTCGACAAGGTTGATTCTGAGATACTCGGCCGAAGTGCTGATGGGTTTGTTCCAGGTGGTTGGTGGTCCATAAACGAAGGAAATCCCAAT GCAAGCATCCCGGAAAACATCAGGGCAAACACGACGAAACTTAAACCTGGCCCTGGAGCTCAGAGGCTCAAGAATCTTATCACAGGTCTTCTGTCAGCTG ACGGCTTTCGCACATCGCACTGCATCTGA
AA sequence Show only first row Show all	>Lus10001076 pacid=23149474 polypeptide=Lus10001076 locus=Lus10001076.g ID=Lus10001076.BGIv1.0 annot-version=v1.0 METINGSKLQQQKKQQKWFFLLISSLFLSTLLILLTLTFSPTTSTSTKLLFHSYRRTWWQKSGAGAGADRKLPLFAESKLSKPEASAAKVPRLAYLISGS AGDGVNLKRALKALYHPRNQYVVHLDLEAPLEERLELIRWVKEGEKVFQQVGNVRVVVRSNLVTYRGPTMFSNTLHAASILLRDGGEWDWFINLSASDYP LLTQDDLLYTLSSIPRDLNFIEHTSDIGWKEDQRARPVIIDPGLYSLQKSDVFWVTERRSVPSAYRLFTGSAWMMLSRPFIEYCLWGWDNLPRIVLMYYT NFLSSPEGYFHTVICNADEFRNTTVNHDLHFISWDNPPKQHPHFLTLDDYQSMVDSNAPFARKFGRNDPVLDKVDSEILGRSADGFVPGGWWSINEGNPN ASIPENIRANTTKLKPGPGAQRLKNLITGLLSADGFRTSHCI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10001076 [exp]	0	1
AT2G47160		AtBOR1, BOR1	REQUIRES HIGH BORON 1, HCO3- t...		Lus10043101 [exp]	1.4	0.8621
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036779 [exp]	6.0	0.8290
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	10.8	0.8439
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10037147 [exp]	14.5	0.8044
AT1G05280			Protein of unknown function (D...		Lus10027153 [exp]	22.2	0.7049
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	22.6	0.8213
AT3G62270			HCO3- transporter family (.1)		Lus10032651 [exp]	23.9	0.7633
AT5G12000			Protein kinase protein with ad...		Lus10006021 [exp]	27.3	0.7733
AT2G41200			unknown protein		Lus10008568 [exp]	27.6	0.7957
					Lus10011661 [exp]	33.2	0.7712

Compare expression of checked genes

Lus10001076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.