Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16990 181 / 1e-56 Zinc-binding dehydrogenase family protein (.1) AT1G65560 179 / 9e-56 Zinc-binding dehydrogenase family protein (.1) AT5G38000 179 / 1e-55 Zinc-binding dehydrogenase family protein (.1) AT5G16980 174 / 7e-55 Zinc-binding dehydrogenase family protein (.1.2) AT5G16970 176 / 1e-54 AT-AER alkenal reductase (.1) AT5G17000 176 / 1e-54 Zinc-binding dehydrogenase family protein (.1) AT5G37940 176 / 2e-54 Zinc-binding dehydrogenase family protein (.1) AT5G37980 174 / 2e-53 Zinc-binding dehydrogenase family protein (.1) AT1G26320 170 / 6e-52 Zinc-binding dehydrogenase family protein (.1.2) AT5G16960 168 / 2e-51 Zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030087 [exp] 264 / 8e-89 AT5G16990 336 / 1e-114 Zinc-binding dehydrogenase family protein (.1) Lus10030086 [exp] 189 / 1e-60 AT5G16990 199 / 9e-63 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 184 / 2e-57 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 179 / 2e-55 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 178 / 5e-55 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 176 / 3e-54 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 175 / 5e-54 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 175 / 8e-54 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 172 / 6e-53 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G070000 [exp] 210 / 1e-67 AT5G16990 341 / 1e-116 Zinc-binding dehydrogenase family protein (.1) Potri.010G177700 [exp] 192 / 2e-60 AT1G65560 514 / 0.0 Zinc-binding dehydrogenase family protein (.1) Potri.007G142400 [exp] 187 / 9e-59 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.017G002300 [exp] 183 / 5e-57 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143800 [exp] 177 / 1e-54 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002700 [exp] 176 / 2e-54 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143600 [exp] 172 / 1e-52 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G005700 [exp] 172 / 3e-52 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143700 [exp] 169 / 7e-52 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.017G006000 [exp] 169 / 2e-51 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10001077 pacid=23149478 polypeptide=Lus10001077 locus=Lus10001077.g ID=Lus10001077.BGIv1.0 annot-version=v1.0 ATGTTGGACTATTTGAGGTGGGAAAGGCAAAGAAAGGAGTACACTGTATTTGTCTCCACGGCTTCTGGTTCTGTTGGACATCTAGTTGGACAGTTTGCAA AGCTTCATGGCTGTTACGTTGTTGGCTGTGCTGGGACCAACCCCAAAGTGGATTTGCTCAAAGAAAAGCTTGGCTTTGATGATGCATTCAACTACAAGGA ACAAACTGACCTCAAGGCAACTCTCAAGAAGTATTTCCCGACTGGGATCGATGTGTACTTTGACAATATAGGAGGCGAGATGTTGGGGGCCGCAGTTGAG AGCATGAACACGTTTGGAAGAGTAGTAGCTCGTGGCGCCTTCTCTGGTACACTGAGAATAACAATCCAAGGGTTTCTGGCAGCTGATTTCTGCACTCTCT TCCCTGAATTCATCTCCACAACTTGTGAACATCTCAGCTCAGGGAAGGTGGTGTCTCTTGAAGACATTTCCATTGGTCTCCAAACCATTCGTTCTCCATT TGTTAGCCTCTTCACTGGTGGTAATGTTGGGAAGAAGATTGTTCAGATTTCAGAGGATTGTGATTGA
AA sequence Show only first row Show all	>Lus10001077 pacid=23149478 polypeptide=Lus10001077 locus=Lus10001077.g ID=Lus10001077.BGIv1.0 annot-version=v1.0 MLDYLRWERQRKEYTVFVSTASGSVGHLVGQFAKLHGCYVVGCAGTNPKVDLLKEKLGFDDAFNYKEQTDLKATLKKYFPTGIDVYFDNIGGEMLGAAVE SMNTFGRVVARGAFSGTLRITIQGFLAADFCTLFPEFISTTCEHLSSGKVVSLEDISIGLQTIRSPFVSLFTGGNVGKKIVQISEDCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10001077 [exp]	0	1
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	5.3	0.7612
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040924 [exp]	8.4	0.7651
AT2G27520			F-box and associated interacti...		Lus10004586 [exp]	12.5	0.6752
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	13.9	0.7154
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	14.0	0.7035
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10020763 [exp]	20.0	0.6694
AT4G36550			ARM repeat superfamily protein...		Lus10028307 [exp]	27.9	0.6854
AT1G24110			Peroxidase superfamily protein...		Lus10010716 [exp]	35.2	0.6771
AT2G03810			18S pre-ribosomal assembly pro...		Lus10036829 [exp]	35.7	0.6774
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	36.9	0.6715

Compare expression of checked genes

Lus10001077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.