Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37490 258 / 4e-81 ARM repeat superfamily protein (.1) AT1G66160 247 / 6e-77 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT3G02840 183 / 4e-53 ARM repeat superfamily protein (.1) AT3G19380 176 / 5e-50 PUB25 plant U-box 25 (.1) AT1G49780 140 / 9e-37 PUB26 plant U-box 26 (.1) AT3G52450 140 / 1e-36 PUB22 plant U-box 22 (.1) AT2G35930 135 / 5e-35 PUB23 plant U-box 23 (.1) AT3G11840 114 / 2e-27 PUB24 plant U-box 24 (.1) AT5G64660 99 / 3e-22 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G18710 98 / 4e-22 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040125 [exp] 438 / 3e-154 AT3G02840 164 / 1e-48 ARM repeat superfamily protein (.1) Lus10040124 [exp] 351 / 9e-121 AT1G66160 154 / 6e-45 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) Lus10004189 [exp] 167 / 3e-50 AT1G66160 75 / 7e-17 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) Lus10016166 [exp] 176 / 6e-50 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10029393 [exp] 132 / 5e-34 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10021267 [exp] 127 / 2e-32 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10013584 [exp] 125 / 1e-31 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10000800 [exp] 123 / 1e-30 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10008368 [exp] 119 / 5e-29 AT3G11840 284 / 2e-91 plant U-box 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G042600 [exp] 438 / 2e-151 AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1) Potri.015G031000 [exp] 437 / 5e-151 AT5G37490 323 / 9e-107 ARM repeat superfamily protein (.1) Potri.008G137700 [exp] 337 / 4e-112 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.017G135000 [exp] 330 / 5e-109 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1) Potri.004G083900 [exp] 324 / 1e-106 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1) Potri.010G103100 [exp] 323 / 2e-106 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.009G100200 [exp] 199 / 4e-59 AT1G49780 515 / 0.0 plant U-box 26 (.1) Potri.004G140100 [exp] 199 / 5e-59 AT1G49780 517 / 0.0 plant U-box 26 (.1) Potri.009G016200 [exp] 151 / 7e-41 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.016G069400 [exp] 139 / 1e-36 AT3G52450 511 / 0.0 plant U-box 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10001079 pacid=23148933 polypeptide=Lus10001079 locus=Lus10001079.g ID=Lus10001079.BGIv1.0 annot-version=v1.0 ATGGCGTTTTGGAGAAGGAAAAGGATCACTGCCAATCTGGACAGCAACAGCAAGCATAAGAATCACTCAATGATTAACGGAAAGAAGAAGGAAATAGAGT CGCTTCAACAGGAAGAAGAGAAAGCGGTTGTGGTTCCGACCCATTTCCTCTGCCCGATATCTCTTGACCTGATGACCGATCCGGTCACATTGTCCTCCGG CATCTCCTACGACCGTGACAGCATCGAGACCTGGCTTAAAGGCGGCAACTTCACCTGCCCAGTCACCAATCAGACACTCTTGAGCTTCGATTTGGTACCC AATCATTCCCTCCGCCGTATGATTCAAGACTGGTGCGTTCAGAACGGCAGATTCGGCGTCGAGAGAATCCCTACTCCTAGAGTCCCTGTTTCCTCTTCTC AAATCTCCGCCGTCCTCCTCCGGCTGGAGGATTCCGCCGCGAGATTGAACGTGTCGGAGACCTTGGACTCCTTGCGTAAGATTAACAGCTGGGGGAATGA GAGCGAGAGGAATCGATTGTGTATCGTCTCCGCCGAAGCAGCCGCCGTCCTCGCCGCCGCGTTCGACGGATTCGCAGCCGGCGAATCCGTCGGAGTACTG GAGCAGCTGCTAGCTTCGATTAGCTGGATGCTTCCCATCGTCGACGCGGAAGCTATCCGGCGATTGGGATCGCCGGAATCGGTGAAAGCACTCGTCACCT TCCTGAAACCAAATAGCAACCGGAAGCTCGTCGTGGACGTATCGGCAAAGCACAACGCCCTCGCCGCTCTTAAGGAGCTGCTTACATCTACTTCTTCCTC TTCGGTAGCGGAATCAATGATGGAAATCGAAGGATTGGACAAAATCCTGTTCCGATTCCTCCGATCCCCAATTTCCCCGACCATCACCAAATCGACGTTA ACCTTAATTTTCAACCTCATCCAGATCTCAACCACGAAAACCGAACAATTCAAATCCTCGCTGGTATCCATGGGAGCAGTCGACCTACTCCTGGAGATCA CAATCGATTTCTCCACGTCGTCGAAGAGCATCAGCGAAAAGGCGCTGGGAGTTCTGGACAAGCTATGCGACTCCGCCGAAGGCAGAGCCGCCGCGTCGCG TAACTCGTTGACGGTGCCGCTGCTGGTGAAGAAGATACTGAGGATATCGTCGGTGGCTACAGGGTTCTCGGTGTCGATGATCTGGAAGCTGGGGAAATGC GAGCAGAAGGCGCTGATGGAAGGGCTACAAGTAGGGGCGTTCCAGAAGCTGGTGCTGGTATTGCAGCTTGGATGTGGGGACGAGACGAAGGAGAAGGCTA CGGCGGTTCTGAAGCTGATGAATCCTTACAGGAATGAGTTCGAGTGCACCGAGTCTGTTGATTTCAAGAACCTGAAGCGATCATTCTGA
AA sequence Show only first row Show all	>Lus10001079 pacid=23148933 polypeptide=Lus10001079 locus=Lus10001079.g ID=Lus10001079.BGIv1.0 annot-version=v1.0 MAFWRRKRITANLDSNSKHKNHSMINGKKKEIESLQQEEEKAVVVPTHFLCPISLDLMTDPVTLSSGISYDRDSIETWLKGGNFTCPVTNQTLLSFDLVP NHSLRRMIQDWCVQNGRFGVERIPTPRVPVSSSQISAVLLRLEDSAARLNVSETLDSLRKINSWGNESERNRLCIVSAEAAAVLAAAFDGFAAGESVGVL EQLLASISWMLPIVDAEAIRRLGSPESVKALVTFLKPNSNRKLVVDVSAKHNALAALKELLTSTSSSSVAESMMEIEGLDKILFRFLRSPISPTITKSTL TLIFNLIQISTTKTEQFKSSLVSMGAVDLLLEITIDFSTSSKSISEKALGVLDKLCDSAEGRAAASRNSLTVPLLVKKILRISSVATGFSVSMIWKLGKC EQKALMEGLQVGAFQKLVLVLQLGCGDETKEKATAVLKLMNPYRNEFECTESVDFKNLKRSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37490			ARM repeat superfamily protein...		Lus10001079 [exp]	0	1
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041973 [exp]	1.0	0.9981
AT4G37290			unknown protein		Lus10019310 [exp]	1.4	0.9980
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10022762 [exp]	2.4	0.9971
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	3.2	0.9962
AT4G37290			unknown protein		Lus10010255 [exp]	4.0	0.9968
AT1G03220			Eukaryotic aspartyl protease f...		Lus10010278 [exp]	4.9	0.9957
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030806 [exp]	5.3	0.9952
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Lus10017063 [exp]	5.9	0.9881
AT1G35210			unknown protein		Lus10010343 [exp]	6.0	0.9942
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021314 [exp]	6.0	0.9948

Compare expression of checked genes

Lus10001079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.