Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73500 296 / 2e-101 ATMKK9 MAP kinase kinase 9 (.1) AT1G18350 290 / 8e-99 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT1G51660 244 / 4e-80 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT3G21220 243 / 5e-80 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT3G06230 232 / 2e-76 ATMKK8 MAP kinase kinase 8 (.1) AT1G32320 179 / 2e-55 ATMKK10 MAP kinase kinase 10 (.1) AT4G29810 171 / 2e-51 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT4G26070 160 / 1e-47 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT5G56580 154 / 2e-45 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT5G40440 151 / 7e-43 ATMKK3 mitogen-activated protein kinase kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040128 [exp] 286 / 6e-100 AT1G73500 186 / 1e-59 MAP kinase kinase 9 (.1) Lus10035764 [exp] 234 / 3e-76 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10027623 [exp] 172 / 1e-51 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10011945 [exp] 171 / 1e-50 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10012938 [exp] 147 / 2e-42 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10001137 [exp] 148 / 4e-42 AT5G40440 711 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10040127 [exp] 139 / 2e-41 AT1G73500 164 / 1e-50 MAP kinase kinase 9 (.1) Lus10022265 [exp] 145 / 2e-40 AT5G40440 861 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10034986 [exp] 141 / 5e-40 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G030700 [exp] 351 / 8e-123 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.012G043200 [exp] 341 / 5e-119 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.010G049500 [exp] 245 / 3e-81 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.008G183700 [exp] 242 / 4e-80 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.008G009800 [exp] 238 / 7e-78 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.010G249300 [exp] 236 / 2e-77 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.018G050800 [exp] 171 / 1e-51 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.006G146500 [exp] 168 / 1e-50 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G068500 [exp] 162 / 3e-48 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.001G345500 [exp] 149 / 4e-42 AT5G40440 851 / 0.0 mitogen-activated protein kinase kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001081 pacid=23148920 polypeptide=Lus10001081 locus=Lus10001081.g ID=Lus10001081.BGIv1.0 annot-version=v1.0 ATGGAGATCCTCCGCCGCACCGATTCTCCCCACATCGTCAAGTCCCACGGCATCCATGAAACCCCCGCCGGAGACATTAAGATCCTCATGGAGTACATGG ACCTCGGAACGCTCGATTCGCTTCTGAAAACCGAAGGCAGAGATTTCTTCACGGAGGAGAGGCTCGCCGGAATCGGCCGCCAGGTGCTCGCCGGGCTGAA CTACCTCCACTCCCAGAAGATCATCCACCGTGACATCAAGCCGTCGAATCTGCTGGTCAACTCCGCGATGGAAGTCAAAATCGCCGATTTCGGAGTGAGC AAGATCATGTGCAGGACGCTTGACGCCTGTAATTCTTACGTCGGGACCTGCGCTTACATGAGCCCCGAGAGATTCGATCCCGATTCTTACGGGGGGAATT ACAACGGTTACGCCGCGGATATATGGAGCTTGGGATTGACGCTTCTGGAGCTTTATATGGGCCATTTCCCGTTTCTGCCACCGGGGCAGAGGCCGAATTG GTCGAGTTTGATGTGCGCGATTTGTTTCGGGGAGGCGCCGCCGTTGCCGGAGGAGGCGTCGGAGGATTTTAAGGGGTTTATCAAGTGTTGTTTGCAGAAG GATTCGAGTCAGAGGTTGACGGTGACGGAGTTGCTGGCTCACCCGTTCGTTTCTAAAGTAGAGATGACAACCCGGTGTTAG
AA sequence Show only first row Show all	>Lus10001081 pacid=23148920 polypeptide=Lus10001081 locus=Lus10001081.g ID=Lus10001081.BGIv1.0 annot-version=v1.0 MEILRRTDSPHIVKSHGIHETPAGDIKILMEYMDLGTLDSLLKTEGRDFFTEERLAGIGRQVLAGLNYLHSQKIIHRDIKPSNLLVNSAMEVKIADFGVS KIMCRTLDACNSYVGTCAYMSPERFDPDSYGGNYNGYAADIWSLGLTLLELYMGHFPFLPPGQRPNWSSLMCAICFGEAPPLPEEASEDFKGFIKCCLQK DSSQRLTVTELLAHPFVSKVEMTTRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	0	1
AT3G56460			GroES-like zinc-binding alcoho...		Lus10003691 [exp]	1.0	0.9034
AT5G25930			Protein kinase family protein ...		Lus10006028 [exp]	2.0	0.8869
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10037083 [exp]	4.5	0.8395
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033209 [exp]	5.6	0.8153
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10037819 [exp]	12.5	0.8557
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10011184 [exp]	19.0	0.8364
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10035059 [exp]	19.2	0.8124
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10012102 [exp]	19.6	0.7997
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10023117 [exp]	20.5	0.8603
AT1G10140			Uncharacterised conserved prot...		Lus10018665 [exp]	21.3	0.7884

Compare expression of checked genes

Lus10001081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.