Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47030 294 / 2e-102 ATPase, F1 complex, delta/epsilon subunit (.1) ATCG00470 39 / 0.0007 ATCG00470.1, ATPE ATP synthase epsilon chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040130 [exp] 377 / 3e-135 AT5G47030 316 / 3e-111 ATPase, F1 complex, delta/epsilon subunit (.1) Lus10011038 [exp] 333 / 9e-108 AT5G47040 1413 / 0.0 lon protease 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086100 [exp] 307 / 1e-107 AT5G47030 291 / 2e-101 ATPase, F1 complex, delta/epsilon subunit (.1) Potri.014G053000 [exp] 301 / 4e-105 AT5G47030 308 / 6e-108 ATPase, F1 complex, delta/epsilon subunit (.1) Potri.007G062142 [exp] 41 / 8e-05 ATCG00470 219 / 6e-75 ATP synthase epsilon chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02823 [flax] [poplar] ATP-synt_DE_N ATP synthase, Delta/Epsilon chain, beta-sandwich domain
Representative CDS sequence Show only first row Show all	>Lus10001082 pacid=23148929 polypeptide=Lus10001082 locus=Lus10001082.g ID=Lus10001082.BGIv1.0 annot-version=v1.0 ATGTTCAGGCAGGCATCCCGTCTCCTTTCCCGATCCGTCTCTCAGCAGCAGCCCAAGACGGTGGTTGCTGCTCGAGCCTTTTCCTCCGATGTCCCGGCTA CGCCTACCGCGGACGCGACTTTCATCGAATCGTGGAAGAAGGTTATTCCCACTATCGATCCGCCTAAGACTCCTTCCTCCTTCATGAAGCCTCGACCTCC AACGCCATCCACCATCCCCACTAAGCTCACTGTCAACTTTGTCCTTCCCTATGCTACCGAGCTCTCCGCGAAAGAGGTCGACATGATCATCGTCCCAGCA ACCTCAGGGCACATGGGAGTGTTGCCCGGCCATGTTCCCACTATTGCAGAGCTGAAACCGGGAGTGATGACAGTCCACGAAGGAAGTGATGTCTCGAAAT ACTTTGTTAGCAGCGGATTTGCATTCATCCATGGGAACTCAGTGGCTGATGTGATTGCTGTTGAGGCCGTGCCCATTGATCAGATTGATGCAAACTTGGT CCAGAAAGGAGTGGCAGAGTTCAATCAGAAACTCAGCTCCGCCTCTACCGATCTCGAAAAGGCCGAAGCCCAGATAGGAGTGGATGTCTACAGCGCTCTT AACTCGGCACTCACAGGCTAG
AA sequence Show only first row Show all	>Lus10001082 pacid=23148929 polypeptide=Lus10001082 locus=Lus10001082.g ID=Lus10001082.BGIv1.0 annot-version=v1.0 MFRQASRLLSRSVSQQQPKTVVAARAFSSDVPATPTADATFIESWKKVIPTIDPPKTPSSFMKPRPPTPSTIPTKLTVNFVLPYATELSAKEVDMIIVPA TSGHMGVLPGHVPTIAELKPGVMTVHEGSDVSKYFVSSGFAFIHGNSVADVIAVEAVPIDQIDANLVQKGVAEFNQKLSSASTDLEKAEAQIGVDVYSAL NSALTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10001082 [exp]	0	1
AT2G20820			unknown protein		Lus10031625 [exp]	1.0	0.9556
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10019706 [exp]	2.4	0.9479
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10012411 [exp]	2.4	0.9461
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	2.8	0.9556
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10038474 [exp]	3.2	0.9396
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	3.5	0.9466
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10030046 [exp]	4.4	0.9282
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Lus10014562 [exp]	4.9	0.9425
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10019137 [exp]	6.6	0.9344
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10011539 [exp]	8.1	0.9461

Compare expression of checked genes

Lus10001082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.