Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47040 373 / 2e-124 LON2 lon protease 2 (.1) AT5G26860 155 / 2e-43 LON1, LON_ARA_ARA lon protease 1 (.1) AT3G05780 155 / 3e-43 LON3 lon protease 3 (.1) AT3G05790 154 / 6e-43 LON4 lon protease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040131 [exp] 362 / 6e-120 AT5G47040 1400 / 0.0 lon protease 2 (.1) Lus10011038 [exp] 355 / 6e-116 AT5G47040 1413 / 0.0 lon protease 2 (.1) Lus10003009 [exp] 351 / 2e-115 AT5G47040 1420 / 0.0 lon protease 2 (.1) Lus10031414 [exp] 159 / 1e-44 AT5G26860 1402 / 0.0 lon protease 1 (.1) Lus10010919 [exp] 67 / 1e-12 AT5G26860 1275 / 0.0 lon protease 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148400 [exp] 400 / 1e-134 AT5G47040 1460 / 0.0 lon protease 2 (.1) Potri.003G086000 [exp] 399 / 1e-134 AT5G47040 1461 / 0.0 lon protease 2 (.1) Potri.005G017600 [exp] 152 / 2e-42 AT5G26860 1428 / 0.0 lon protease 1 (.1) Potri.013G008900 [exp] 150 / 2e-41 AT5G26860 1467 / 0.0 lon protease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF05362 [flax] [poplar] Lon_C Lon protease (S16) C-terminal proteolytic domain
Representative CDS sequence Show only first row Show all	>Lus10001083 pacid=23148926 polypeptide=Lus10001083 locus=Lus10001083.g ID=Lus10001083.BGIv1.0 annot-version=v1.0 ATGCTCGAGAAAGTTCTCGGGCCTCCAAGGTTTGATGACAAAGAGGCTGCAGAACGTGTTGCGAGTCCGGGCATTTCAGTTGGACTTGTTTGGACTGCCT TTGGAGGGGAGGTGCAGTTTGTGGAGGCCACATCAATGGCTGGAAAGGGTGAATTGCATCTCACTGGGCAGCTTGGAGATGTTATAAAGGAATCAGCACA AATAGCGCTGACCTGGGTTCGAGCCAGGGCATTCGATCTTAAATTGGCAGCAGGCCAGGAAATTAGTCTTCTCGAAGGCAGGGATGTTCACATACATTTC CCTGCCGGGGCGATCCCCAAGGATGGGCCATCAGCTGGTGTGACACTTGTGACCGCTCTGGTTTCTTTGTTCAGTCAGCAGAGAGTAAGAGCAGATACAG CAATGACTGGAGAAATGACTTTGAGAGGACTTGTGCTTCCTGTTGGTGGGATTAAAGATAAGATATTGGCAGCTCACCGTTATGGAATCAAGAGAGTGAT TCTGCCGGAGAGAAACTTGAAGGACTTGGTAGAAGTACCAGCTGCAGTCCTTGGAAGCCTAGAGGTATCTTCCGTTTTCCGCCAGATTATTGTAGCGAAG AGAGTGGAAGACGTTCTCGAACAAGCATTCGAAGGCGGATGTCCATGGAGGCAGCACTCGAGATTATGA
AA sequence Show only first row Show all	>Lus10001083 pacid=23148926 polypeptide=Lus10001083 locus=Lus10001083.g ID=Lus10001083.BGIv1.0 annot-version=v1.0 MLEKVLGPPRFDDKEAAERVASPGISVGLVWTAFGGEVQFVEATSMAGKGELHLTGQLGDVIKESAQIALTWVRARAFDLKLAAGQEISLLEGRDVHIHF PAGAIPKDGPSAGVTLVTALVSLFSQQRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLGSLEVSSVFRQIIVAK RVEDVLEQAFEGGCPWRQHSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47040		LON2	lon protease 2 (.1)		Lus10001083 [exp]	0	1
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	3.7	0.9282
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10039120 [exp]	3.9	0.8970
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10006379 [exp]	3.9	0.9153
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	5.2	0.9175
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10013401 [exp]	6.2	0.9229
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10012333 [exp]	6.3	0.9052
AT4G32190			Myosin heavy chain-related pro...		Lus10006190 [exp]	10.6	0.9160
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10019074 [exp]	10.9	0.9127
AT1G10600		AMSH2	associated molecule with the S...		Lus10030875 [exp]	11.2	0.9132
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032154 [exp]	12.6	0.9066

Compare expression of checked genes

Lus10001083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.